View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_75 (Length: 254)
Name: NF20730_low_75
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_75 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 37652221 - 37651970
Alignment:
| Q |
1 |
caacaatgttgttgttaatgtattcaacaaccttgatgaaccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacc |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37652221 |
caacaatgtcgttgttaatgtattcaacaaccttgatgaaccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacc |
37652122 |
T |
|
| Q |
101 |
cttggtgttcaatgccctattcttcctggaactaactacacctacaaattccaagtgaaggatcagattggaagttacttttactaccctaccaccggtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
37652121 |
cttggtgttcaatgccctattcttcctggaactaactacacctacaaatttcaagtgaaggatcaaattggaagttacttttactaccctaccacaggtc |
37652022 |
T |
|
| Q |
201 |
ttcaaagagccgttggttgtttcggttgtctttgaatcttcagtcgtctgtt |
252 |
Q |
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||||||||||||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
37652021 |
ttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtctgtt |
37651970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 37635193 - 37634943
Alignment:
| Q |
2 |
aacaatgttgttgttaatgtattcaacaaccttgatgaaccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccc |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37635193 |
aacaatgttgttgttaatgtattcaacaaccttgatgaaccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccg |
37635094 |
T |
|
| Q |
102 |
ttggtgttcaatgccctattcttcctggaactaactacacctacaaattccaagtgaaggatcagattggaagttacttttactaccctaccaccggtct |
201 |
Q |
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||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
37635093 |
ctggtgttcaatgccccattcttcctgggactaactatacctacaaattccaagtgaaggatcaaattggaagttacttttactaccctaccacaggtct |
37634994 |
T |
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| Q |
202 |
tcaaagagccgttggttgtttcggttgtctttgaatcttcagtcgtctgtt |
252 |
Q |
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|||||||||||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
37634993 |
tcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtctgtt |
37634943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 37638107 - 37637857
Alignment:
| Q |
2 |
aacaatgttgttgttaatgtattcaacaaccttgatgaaccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccc |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37638107 |
aacaatgttgttgttaatgtattcaacaaccttgatgaaccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccg |
37638008 |
T |
|
| Q |
102 |
ttggtgttcaatgccctattcttcctggaactaactacacctacaaattccaagtgaaggatcagattggaagttacttttactaccctaccaccggtct |
201 |
Q |
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||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
37638007 |
ctggtgttcaatgccccattcttcctgggactaactatacctacaaattccaagtgaaggatcaaattggaagttacttttactaccctaccacaggtct |
37637908 |
T |
|
| Q |
202 |
tcaaagagccgttggttgtttcggttgtctttgaatcttcagtcgtctgtt |
252 |
Q |
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|||||||||||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
37637907 |
tcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtctgtt |
37637857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 37641021 - 37640771
Alignment:
| Q |
2 |
aacaatgttgttgttaatgtattcaacaaccttgatgaaccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccc |
101 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37641021 |
aacaatgttgttgctaatgtattcaacaaccttgatgaaccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccc |
37640922 |
T |
|
| Q |
102 |
ttggtgttcaatgccctattcttcctggaactaactacacctacaaattccaagtgaaggatcagattggaagttacttttactaccctaccaccggtct |
201 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
37640921 |
ctggtgttcaatgccccattcttcctgggactaactatacctacaaattccaagtgaaggatcaaattggaagttacttttactaccctaccacaggtct |
37640822 |
T |
|
| Q |
202 |
tcaaagagccgttggttgtttcggttgtctttgaatcttcagtcgtctgtt |
252 |
Q |
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|||||||||||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
37640821 |
tcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtctgtt |
37640771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 37646395 - 37646145
Alignment:
| Q |
2 |
aacaatgttgttgttaatgtattcaacaaccttgatgaaccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37646395 |
aacaatgttgttgttaatgtattcaacaaccttgatgaaccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccg |
37646296 |
T |
|
| Q |
102 |
ttggtgttcaatgccctattcttcctggaactaactacacctacaaattccaagtgaaggatcagattggaagttacttttactaccctaccaccggtct |
201 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
37646295 |
ctggtgttcaatgccccattcttcctgggactaactatacctacaaattccaagtgaaggatcaaattggaagttacttttactaccctaccacaggtct |
37646196 |
T |
|
| Q |
202 |
tcaaagagccgttggttgtttcggttgtctttgaatcttcagtcgtctgtt |
252 |
Q |
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|
|||||||||||||||| |||||||| ||||| ||||||||||||||||||| |
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|
| T |
37646195 |
tcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtctgtt |
37646145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 37649308 - 37649058
Alignment:
| Q |
2 |
aacaatgttgttgttaatgtattcaacaaccttgatgaaccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37649308 |
aacaatgttgttgttaatgtattcaacaaccttgatgaaccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtaccg |
37649209 |
T |
|
| Q |
102 |
ttggtgttcaatgccctattcttcctggaactaactacacctacaaattccaagtgaaggatcagattggaagttacttttactaccctaccaccggtct |
201 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
37649208 |
ctggtgttcaatgccccattcttcctgggactaactatacctacaaattccaagtgaaggatcaaattggaagttacttttactaccctaccacaggtct |
37649109 |
T |
|
| Q |
202 |
tcaaagagccgttggttgtttcggttgtctttgaatcttcagtcgtctgtt |
252 |
Q |
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|||||||||||||||| |||||||| ||||| ||||||||||||||||||| |
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|
| T |
37649108 |
tcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtctgtt |
37649058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 32388523 - 32388331
Alignment:
| Q |
9 |
ttgttgttaatgtattcaacaaccttgatgaaccattgcttttcacatggcacggtgttcaacagaggaagaattcatggcaagatggtacccttggtgt |
108 |
Q |
| |
|
|||| ||||| || ||||||||||||||||| ||| | |||||||||||| |||| ||||||| ||||| || || ||| ||||| || || || |
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| T |
32388523 |
ttgtagttaacgttttcaacaaccttgatgagccactccttttcacatggagcggtattcaacaaaggaaaaactcgtgggccgatggaacatcgggagt |
32388424 |
T |
|
| Q |
109 |
tcaatgccctattcttcctggaactaactacacctacaaattccaagtgaaggatcagattggaagttacttttactaccctaccaccggtct |
201 |
Q |
| |
|
||||| |||||| || ||||| |||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||| |||||||| |
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|
| T |
32388423 |
ccaatgtcctattgccccgggaaccaactacacctacaaattccaggttaaggatcaaattggtagttacttttactaccctactaccggtct |
32388331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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