View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_77 (Length: 251)
Name: NF20730_low_77
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_77 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 79 - 251
Target Start/End: Original strand, 19727918 - 19728092
Alignment:
| Q |
79 |
ggcaagttttatgaattgactaataagcccctccctaaaaatatatctaatcaaaaaagtacttc-aacnnnnnnn-agggaaaatttacttcaacttag |
176 |
Q |
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| T |
19727918 |
ggcaagttttatgaattgactaataaacccctacctaaaaatatatctaatcaaaaaaatacttccaactttttttcagggaaaatttacttcaacttaa |
19728017 |
T |
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| Q |
177 |
aaaatatttgtttgtgaaatttaatctatgtaagaaccataaaacaaccataatattttattaaaaacaaaaata |
251 |
Q |
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| T |
19728018 |
aaattatttttttgtgaaatttaatctatgtaagaaccataaaacaaccataatattttattaaaaacaaaaata |
19728092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 44
Target Start/End: Original strand, 19727851 - 19727881
Alignment:
| Q |
14 |
aatatggtagattttaagtattgtttggttt |
44 |
Q |
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| T |
19727851 |
aatatggtagattttaagtattgtttggttt |
19727881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 85 - 245
Target Start/End: Original strand, 8970061 - 8970223
Alignment:
| Q |
85 |
ttttatgaattgactaataagcccctccctaaaaatatatctaatcaaaaaagtacttcaacnnnnnnn---agggaaaatttacttcaacttagaaaat |
181 |
Q |
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| T |
8970061 |
ttttatgaattgactaataaacccctacctaaaattatatctaatcaaaaaa-tacttcaacttttttttttagagaaaaaatacttcaacttaaaatat |
8970159 |
T |
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| Q |
182 |
atttgtttgtgaaatttaatctatgtaagaaccataaaacaaccataatattttattaaaaaca |
245 |
Q |
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| T |
8970160 |
tcttgtttgtgaaatttaatctatgtaagaaccataaaacaaccataatattttattaaaaaca |
8970223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 248
Target Start/End: Complemental strand, 7591553 - 7591396
Alignment:
| Q |
85 |
ttttatgaattgactaataagcccctccctaaaaatatatctaatcaaaaaagtacttcaac-----nnnnnnnagggaaaatttacttcaacttagaaa |
179 |
Q |
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| T |
7591553 |
ttttatgaattgactaataagcccctacctaaaattatatctaatcaaaaa--tacttcaacttttttttttttagggaaaaaatacttcaacttaaaat |
7591456 |
T |
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| Q |
180 |
atatttgtttgtgaaatttaatctatgtaagaaccataaaacaaccataatattttattaaaaacaaaa |
248 |
Q |
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| T |
7591455 |
atacttgtctgtgaaatt---------taagaaccataaaacaaccataatattttattaaaaacaaaa |
7591396 |
T |
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