View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_79 (Length: 251)
Name: NF20730_low_79
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_79 |
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Alignment Details
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 9529798 - 9529865
Alignment:
| Q |
1 |
ttaatttatattcatccattcttttgtattttctcattttatttcctttattgtttgtgcacacatgc |
68 |
Q |
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| T |
9529798 |
ttaatttatatgcatccattcttttgtattttctcattttatttcctttattgtttgtgcacacatgc |
9529865 |
T |
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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 9529909 - 9529988
Alignment:
| Q |
113 |
tgttacccctctatctatcaacataaaccattatnnnnnnntttagcgttcttctaaatatttatacgcactatatgtat |
192 |
Q |
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| T |
9529909 |
tgttacccctctatctatcaacataaaccattataaaaaaatatagcgttcttctaaatatttatacacattatatgtat |
9529988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Original strand, 9534230 - 9534262
Alignment:
| Q |
203 |
aaaacgatatcccatttatgtttagggccctac |
235 |
Q |
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| T |
9534230 |
aaaacgatatcccctttatgtttagggccctac |
9534262 |
T |
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