View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_81 (Length: 250)
Name: NF20730_low_81
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_81 |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 52085857 - 52086101
Alignment:
| Q |
1 |
tcaatataagatatgcaattatcgacaaaaagaaatacaacatattgaatgnnnnnnnnnnnnnnnnnnnnnaataaaaagatactatgaataccataat |
100 |
Q |
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| T |
52085857 |
tcaatataagatatgcaattatcgacaaaaagaaatacaagatattgaatgattttattttattttatttataataaaaagatactatgaataccataat |
52085956 |
T |
|
| Q |
101 |
tatcttaataattaatttaaaatatcagatttatgttagatttgaattctaa---tgttgtaac-----nnnnnnnnnnntctaaaccctattcaactgc |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
52085957 |
tatcttaataattaatttaaaatatcagatttatgttagatttgaattctaagattgttgtaacaaaaaaaaataaaaattctaaaccctattcaactgc |
52086056 |
T |
|
| Q |
193 |
taatgtgactagattgttaattagttgctacataatacaagctct |
237 |
Q |
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|||||||||||||||||||||||| || ||||||||| ||||||| |
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| T |
52086057 |
taatgtgactagattgttaattagctgatacataatataagctct |
52086101 |
T |
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