View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_82 (Length: 250)
Name: NF20730_low_82
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_82 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 250
Target Start/End: Original strand, 30727353 - 30727601
Alignment:
| Q |
5 |
ggtagataatactgttagtctgttactactgt--ggtagtgtaacttaacttcaactatttagtatgtacctaaagtgtgtgccataatttaactcattt |
102 |
Q |
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| T |
30727353 |
ggtatataatactgttagtctgttactactgtctggtagtgtaacttaacttcaactatttagtatgtacctaaagtgtgtgccataatttaacacattt |
30727452 |
T |
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| Q |
103 |
ctattgtaccaaaaacaagtgtatagcatttctgttccaccacagtaactattttaaaattatagtacgtagaaaacgtatttactcttctttcctctca |
202 |
Q |
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| T |
30727453 |
ccattgtaccaaaaacaagtgtatagcatttctgttccaccacagtaactattttataattatagtatgtagaaaacgtatttactcttctttcctctca |
30727552 |
T |
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| Q |
203 |
t-atgcttgcttgccaattttaaacctaataaataacaatgcaaaaact |
250 |
Q |
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| T |
30727553 |
tcatgcttgcttgccaattttaaacctaataaataacaatgcaaaaact |
30727601 |
T |
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