View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20730_low_83 (Length: 250)
Name: NF20730_low_83
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_83 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 48493976 - 48493732
Alignment:
| Q |
1 |
atttgagggtcttataattgaattagccattattttgatttaaaattttgatatagatacatttttcttatgacatgatgacttggcaattattcctttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48493976 |
atttgagggtcttataattgaattagccattattttgatttaaaattttgatatagatacatttttcttatgacatgatgacttggcaattattcctttt |
48493877 |
T |
|
| Q |
101 |
gcaggttctatggatccagcatccaatagtttgattcaaatgagaaagaatcatggaataattggtataatagggtggggcttaatcctaccagtaggtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48493876 |
gcaggttctatggatccagcatccaatagtttgattcaaatgagaaagaatcatggaataattggtataatagggtggggcttaatcctaccagtaggtg |
48493777 |
T |
|
| Q |
201 |
caattgttgctaggtacttcaaacataaggaacccctttgcttct |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48493776 |
caattgttgctaggtacttcaaacataaggaacccctttggttct |
48493732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University