View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20730_low_84 (Length: 250)

Name: NF20730_low_84
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20730_low_84
NF20730_low_84
[»] chr1 (8 HSPs)
chr1 (12-236)||(9529455-9529685)
chr1 (92-189)||(5613213-5613310)
chr1 (65-150)||(41189262-41189348)
chr1 (98-163)||(35793988-35794053)
chr1 (97-183)||(32301997-32302083)
chr1 (90-129)||(12304924-12304963)
chr1 (125-191)||(35113104-35113170)
chr1 (70-150)||(17633466-17633547)
[»] chr3 (12 HSPs)
chr3 (84-183)||(41538648-41538747)
chr3 (71-189)||(32933371-32933490)
chr3 (93-191)||(23884320-23884418)
chr3 (90-183)||(34804650-34804743)
chr3 (92-144)||(39213688-39213740)
chr3 (111-182)||(29126239-29126310)
chr3 (92-138)||(20824541-20824587)
chr3 (113-150)||(3942236-3942273)
chr3 (92-144)||(20847574-20847626)
chr3 (91-191)||(35201718-35201817)
chr3 (110-144)||(48918902-48918936)
chr3 (113-147)||(49757816-49757850)
[»] chr2 (8 HSPs)
chr2 (65-162)||(33314504-33314602)
chr2 (90-190)||(3048251-3048349)
chr2 (83-183)||(41164466-41164565)
chr2 (90-191)||(17251482-17251583)
chr2 (90-130)||(41668857-41668897)
chr2 (88-143)||(6752430-6752485)
chr2 (88-143)||(6756987-6757042)
chr2 (73-176)||(15232026-15232130)
[»] chr8 (12 HSPs)
chr8 (91-177)||(23038881-23038967)
chr8 (116-183)||(12838945-12839012)
chr8 (93-163)||(13755674-13755744)
chr8 (93-150)||(13766443-13766500)
chr8 (110-150)||(1170804-1170844)
chr8 (66-129)||(38640093-38640157)
chr8 (116-190)||(8007496-8007570)
chr8 (109-154)||(2743197-2743242)
chr8 (110-183)||(28401153-28401226)
chr8 (110-190)||(7992467-7992547)
chr8 (110-150)||(8035252-8035292)
chr8 (94-150)||(38804270-38804326)
[»] chr7 (14 HSPs)
chr7 (92-189)||(18891748-18891845)
chr7 (90-139)||(42814019-42814068)
chr7 (121-190)||(25654452-25654521)
chr7 (91-146)||(7371721-7371776)
chr7 (110-150)||(19736456-19736496)
chr7 (93-145)||(33293604-33293656)
chr7 (92-183)||(24649396-24649487)
chr7 (91-190)||(35217525-35217624)
chr7 (110-180)||(7606558-7606628)
chr7 (69-147)||(25290117-25290196)
chr7 (112-150)||(25546038-25546076)
chr7 (122-188)||(42992932-42992998)
chr7 (123-183)||(4897995-4898055)
chr7 (65-188)||(43072650-43072774)
[»] chr6 (5 HSPs)
chr6 (92-159)||(14702864-14702931)
chr6 (92-159)||(14703149-14703216)
chr6 (95-183)||(32362160-32362248)
chr6 (92-147)||(14696681-14696736)
chr6 (104-183)||(30838218-30838298)
[»] chr5 (6 HSPs)
chr5 (110-185)||(28868693-28868768)
chr5 (110-145)||(31746593-31746628)
chr5 (110-145)||(31763893-31763928)
chr5 (93-147)||(23936627-23936681)
chr5 (68-150)||(28462802-28462885)
chr5 (97-183)||(35677463-35677549)
[»] chr4 (11 HSPs)
chr4 (95-183)||(19056836-19056924)
chr4 (90-145)||(42874130-42874185)
chr4 (66-150)||(2685466-2685551)
chr4 (111-190)||(8714262-8714341)
chr4 (110-180)||(3001020-3001090)
chr4 (91-150)||(24537404-24537463)
chr4 (94-144)||(897682-897732)
chr4 (91-193)||(20004254-20004356)
chr4 (90-144)||(22398184-22398238)
chr4 (110-182)||(24489109-24489181)
chr4 (90-150)||(38375142-38375202)
[»] scaffold0457 (1 HSPs)
scaffold0457 (91-183)||(2235-2327)
[»] scaffold0027 (1 HSPs)
scaffold0027 (90-154)||(137348-137412)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 9529685 - 9529455
Alignment:
Q  12 gaagaaatgttgcaaaattgtatgtgatcatttttaaaaaataccatctatttgatacataatacataatcgtaatatggttaaaatttacaatcaaatt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9529685 gaagaaatgttgcaaaattgtatgtgatcatttttaaaaaataccatctatttgatacataatacataattgtaatatggttaaaatttacaatcaaatt 9529586  T
Q  112 gtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaataatgagg------tgaatccttttcaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||      ||||| ||||||||    
T  9529585 gtatttctaacatatataatattcattctcacatgacattcatcactcaaaacatcatatttaatacatgaataatgagggaaatatgaattcttttcaa 9529486  T
Q  206 gatatattggtggtttgttgataaacttgat 236  Q
    |||||||||||||||||||||||||||||||    
T  9529485 gatatattggtggtttgttgataaacttgat 9529455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 5613310 - 5613213
Alignment:
Q  92 ttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaataatga 189  Q
    ||||||||||||| |   |||||||| ||||||||||||||||||||||||||||| |||||| |||||||  |||||||||||||||| || |||||    
T  5613310 ttaaaatttacaaccgctttgtatttttaacatatataatattcattctcacatgatattcatgactcaaaaaatcatatttaatacataaagaatga 5613213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 41189348 - 41189262
Alignment:
Q  65 gatacataatacataatcgtaatatgg-ttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacat 150  Q
    ||||||||||||||||  ||||||  | |||||||||||||| |  ||||||||||||||||||| |||||||||||||||||||||    
T  41189348 gatacataatacataaatgtaatagagcttaaaatttacaataagtttgtatttctaacatatattatattcattctcacatgacat 41189262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 35794053 - 35793988
Alignment:
Q  98 tttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaag 163  Q
    ||||||||||  |||||||| |||||||||||||||| ||||||||||||||| ||| | ||||||    
T  35794053 tttacaatcactttgtatttttaacatatataatatttattctcacatgacatgcatgattcaaag 35793988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 32302083 - 32301997
Alignment:
Q  97 atttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaa 183  Q
    |||||||||||  ||||||||  ||||||||||||||||||||||| |||||||  || || ||||  ||  |||||||||||||||    
T  32302083 atttacaatcattttgtattttaaacatatataatattcattctcatatgacatgtatgacacaaaaaattgtatttaatacatgaa 32301997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 12304924 - 12304963
Alignment:
Q  90 ggttaaaatttacaatcaaattgtatttctaacatatata 129  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  12304924 ggttaaaatttacaatcattttgtatttctaacatatata 12304963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 35113104 - 35113170
Alignment:
Q  125 atataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaataatgagg 191  Q
    |||||||||||||||||| ||||||| ||  |||||||   ||||||||||||||| || |||||||    
T  35113104 atataatattcattctcatatgacatacaagactcaaatagtcatatttaatacataaaaaatgagg 35113170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 17633547 - 17633466
Alignment:
Q  70 ataatacataatcgtaata-tggttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacat 150  Q
    |||||||||||  |||||| | ||||||||| | ||||   |||||||| ||||||||||||||| ||||||||||| ||||    
T  17633547 ataatacataaatgtaataatagttaaaattgagaatctttttgtatttataacatatataatatgcattctcacataacat 17633466  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 183
Target Start/End: Complemental strand, 41538747 - 41538648
Alignment:
Q  84 taatatggttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaa 183  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |  |||||| ||| ||| |||  |||||||||||| ||||||    
T  41538747 taataaggttaaaatttacaatcaaattgtatttctaacatatataatatttattctaatgtgacatgcatgactaaaataatcatatttaatgcatgaa 41538648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 189
Target Start/End: Complemental strand, 32933490 - 32933371
Alignment:
Q  71 taatacataatcgtaatatg-gttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcat 169  Q
    ||||||||||  |||||||| ||||||||||| ||| |  ||||||||||||||||||||||||| ||| |||||||| || ||| ||| |||   ||||    
T  32933490 taatacataaatgtaatatgcgttaaaatttataattactttgtatttctaacatatataatatttattttcacatgatatgcatgacttaaaaactcat 32933391  T
Q  170 atttaatacatgaataatga 189  Q
    |||||||| ||||| |||||    
T  32933390 atttaatatatgaaaaatga 32933371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 23884418 - 23884320
Alignment:
Q  93 taaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaataatgagg 191  Q
    |||||||||||||||  ||||||||||||||||||||||||| ||||| | ||||||| ||| | | | ||  | |||||||||||||||| |||||||    
T  23884418 taaaatttacaatcactttgtatttctaacatatataatatttattcttatatgacatgcatgatttatagagttatatttaatacatgaagaatgagg 23884320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 34804650 - 34804743
Alignment:
Q  90 ggttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaa 183  Q
    ||||||||||||| ||||  || ||||||||||||||||||||||  |||||||||||||| ||| ||| || |   | |||||||||||||||    
T  34804650 ggttaaaatttacgatcactttatatttctaacatatataatattttttctcacatgacatgcatgactgaaggagacttatttaatacatgaa 34804743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 39213740 - 39213688
Alignment:
Q  92 ttaaaatttacaatcaaattgtatttctaacatatataatattcattctcaca 144  Q
    |||||||||||||||| ||||||||| || ||||||||||||||||| |||||    
T  39213740 ttaaaatttacaatcacattgtatttttatcatatataatattcattttcaca 39213688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 29126310 - 29126239
Alignment:
Q  111 tgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatga 182  Q
    ||||||||||||||||||||||||||||  || || |||| ||| |||| |||  |||||||||||||||||    
T  29126310 tgtatttctaacatatataatattcatttccaaataacatgcatgactctaagattcatatttaatacatga 29126239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 20824541 - 20824587
Alignment:
Q  92 ttaaaatttacaatcaaattgtatttctaacatatataatattcatt 138  Q
    |||||||||||||||| ||||||||| || |||||||||||||||||    
T  20824541 ttaaaatttacaatcacattgtatttttatcatatataatattcatt 20824587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 3942273 - 3942236
Alignment:
Q  113 tatttctaacatatataatattcattctcacatgacat 150  Q
    |||||||||||||||||||||| |||||||||||||||    
T  3942273 tatttctaacatatataatatttattctcacatgacat 3942236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 20847574 - 20847626
Alignment:
Q  92 ttaaaatttacaatcaaattgtatttctaacatatataatattcattctcaca 144  Q
    |||||||||||||||| ||| ||||| |||||||||| |||| ||||||||||    
T  20847574 ttaaaatttacaatcacattatatttttaacatatattatatccattctcaca 20847626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 35201718 - 35201817
Alignment:
Q  91 gttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaataatgag 190  Q
    |||| ||||||||||||  || |||||||| |||||| | |||| |||||||| ||| ||| || |||  ||  ||||||||||||||||||||||||||    
T  35201718 gttagaatttacaatcatttt-tatttctatcatatacattattaattctcacttgatatttatgacttcaaaaatcatatttaatacatgaataatgag 35201816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Original strand, 48918902 - 48918936
Alignment:
Q  110 ttgtatttctaacatatataatattcattctcaca 144  Q
    |||||||||||| ||||||||||||||||||||||    
T  48918902 ttgtatttctaatatatataatattcattctcaca 48918936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 49757850 - 49757816
Alignment:
Q  113 tatttctaacatatataatattcattctcacatga 147  Q
    |||||||||||||||||||||| ||||||||||||    
T  49757850 tatttctaacatatataatatttattctcacatga 49757816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 33314602 - 33314504
Alignment:
Q  65 gatacataatacataatcgtaatatgg-ttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaa 162  Q
    ||||||||||||||||  ||||||  | |||||||||||||| |  ||||||||||||||||||| ||||||||||||||||||||| ||| |||||||    
T  33314602 gatacataatacataaatgtaatagagcttaaaatttacaataagtttgtatttctaacatatattatattcattctcacatgacatgcatgactcaaa 33314504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 190
Target Start/End: Complemental strand, 3048349 - 3048251
Alignment:
Q  90 ggttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaataatga 189  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||  || ||||| ||  ||||| |||||| ||||| |||||    
T  3048349 ggttaaaatttacaatcaatttgtaattctaacatatataatatttattctcacatgacatgtatgactcatag--tcatacttaatatatgaaaaatga 3048252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 41164466 - 41164565
Alignment:
Q  83 gtaatatg-gttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatg 181  Q
    |||||||| ||||||| |||||||||  |||||||||||||||||||||||||| || ||| ||||||| ||| ||| ||||  ||  ||||||||||||    
T  41164466 gtaatatgagttaaaaattacaatcattttgtatttctaacatatataatattcgttatcatatgacatacatgactaaaagagtc--atttaatacatg 41164563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 191
Target Start/End: Complemental strand, 17251583 - 17251482
Alignment:
Q  90 ggttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaataatga 189  Q
    ||||||||||||| ||||  ||| ||| |||| |||||| |||||||||||| ||| |||||||| ||| |||  || |||||||||| ||||| |||||    
T  17251583 ggttaaaatttacgatcactttggattactaatatatatcatattcattctcgcatcacattcatgacttaaaaaattatatttaatatatgaagaatga 17251484  T
Q  190 gg 191  Q
    ||    
T  17251483 gg 17251482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 41668897 - 41668857
Alignment:
Q  90 ggttaaaatttacaatcaaattgtatttctaacatatataa 130  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  41668897 ggttaaaatttaaaatcacattgtatttctaacatatataa 41668857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 6752485 - 6752430
Alignment:
Q  88 atggttaaaatttacaatcaaattgtatttctaacatatataatattcattctcac 143  Q
    ||||||||||||||||||||  ||| ||| |||| |||||||||| ||||||||||    
T  6752485 atggttaaaatttacaatcactttgaattactaatatatataatactcattctcac 6752430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 6757042 - 6756987
Alignment:
Q  88 atggttaaaatttacaatcaaattgtatttctaacatatataatattcattctcac 143  Q
    ||||||||||||||||||||  ||| ||| |||| |||||||||| ||||||||||    
T  6757042 atggttaaaatttacaatcactttgaattactaatatatataatactcattctcac 6756987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 176
Target Start/End: Original strand, 15232026 - 15232130
Alignment:
Q  73 atacataatcgtaatatg-gttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatat 171  Q
    ||||||||  |||||||| ||||  |||||||||||   ||||| |||||| ||||||||||| ||||||| |||||||| || | || ||| |||||||    
T  15232026 atacataaatgtaatatgagttagcatttacaatcactctgtatatctaacttatataatatttattctcatatgacattaatgattctaagaatcatat 15232125  T
Q  172 ttaat 176  Q
     ||||    
T  15232126 gtaat 15232130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 23038967 - 23038881
Alignment:
Q  91 gttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaata 177  Q
    |||||||||||||||||  ||||||||||||||||| |||||||||||||||||| ||||  || |||||||   ||||||||||||    
T  23038967 gttaaaatttacaatcacgttgtatttctaacatatgtaatattcattctcacataacatgtatgactcaaatagtcatatttaata 23038881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 12838945 - 12839012
Alignment:
Q  116 ttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaa 183  Q
    ||||| ||||||||||||| |||||||||||||||   | ||||||||  ||||||||||||||||||    
T  12838945 ttctatcatatataatatttattctcacatgacatgtgtgactcaaagactcatatttaatacatgaa 12839012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 13755744 - 13755674
Alignment:
Q  93 taaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaag 163  Q
    |||| |||||||| || ||||| |||||||||||||||| |||||||||| | ||||| ||| ||||||||    
T  13755744 taaattttacaataaatttgtaattctaacatatataattttcattctcataagacatgcatgactcaaag 13755674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 13766500 - 13766443
Alignment:
Q  93 taaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacat 150  Q
    |||| |||||||| || ||||| |||||||||||||||| |||||||||| |||||||    
T  13766500 taaattttacaataaatttgtaattctaacatatataatgttcattctcatatgacat 13766443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 1170804 - 1170844
Alignment:
Q  110 ttgtatttctaacatatataatattcattctcacatgacat 150  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  1170804 ttgtatttctaacatatataatatttattttcacatgacat 1170844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 38640093 - 38640157
Alignment:
Q  66 atacataatacataatcgtaatat-ggttaaaatttacaatcaaattgtatttctaacatatata 129  Q
    |||||||||||||||| ||||||  ||||||||||||||||||  ||||||||| || |||||||    
T  38640093 atacataatacataattgtaatagaggttaaaatttacaatcaccttgtatttccaatatatata 38640157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 8007496 - 8007570
Alignment:
Q  116 ttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaataatgag 190  Q
    ||||||||||||||||||| |||||||||| | ||  || ||||||||   | ||||||||||||||| ||||||    
T  8007496 ttctaacatatataatatttattctcacataatatggatgactcaaagatacttatttaatacatgaaaaatgag 8007570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 2743197 - 2743242
Alignment:
Q  109 attgtatttctaacatatataatattcattctcacatgacattcat 154  Q
    |||||||||||| | ||||||||||| ||||||||| |||||||||    
T  2743197 attgtatttctatcgtatataatatttattctcacacgacattcat 2743242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 28401153 - 28401226
Alignment:
Q  110 ttgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaa 183  Q
    ||||||||||||| |||| ||||||  |||||||||||||| ||| | | ||||  |||||||||||| |||||    
T  28401153 ttgtatttctaacgtatacaatattttttctcacatgacatgcatgaattaaagagtcatatttaatatatgaa 28401226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 7992467 - 7992547
Alignment:
Q  110 ttgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaataatgag 190  Q
    ||||| ||||||||||||||||||| ||| | |||| |||   || | ||||||  || ||||||||||||||||||||||    
T  7992467 ttgtacttctaacatatataatatttattattacataacacggatgattcaaagagtcttatttaatacatgaataatgag 7992547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 8035252 - 8035292
Alignment:
Q  110 ttgtatttctaacatatataatattcattctcacatgacat 150  Q
    ||||| ||||||||||||||||||| |||||||||| ||||    
T  8035252 ttgtacttctaacatatataatatttattctcacataacat 8035292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 38804326 - 38804270
Alignment:
Q  94 aaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacat 150  Q
    |||||||||||||   || |||||| ||||||||||||||||||| |||| ||||||    
T  38804326 aaaatttacaatcgttttatatttccaacatatataatattcattatcacgtgacat 38804270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 189
Target Start/End: Original strand, 18891748 - 18891845
Alignment:
Q  92 ttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaataatga 189  Q
    |||||| |||||||||  |||||||| ||| |||||||||||||||||||||||  |||  || ||||||||  |||||||||||||||||| |||||    
T  18891748 ttaaaagttacaatcactttgtatttgtaatatatataatattcattctcacattgcatgtatgactcaaagagtcatatttaatacatgaacaatga 18891845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 42814019 - 42814068
Alignment:
Q  90 ggttaaaatttacaatcaaattgtatttctaacatatataatattcattc 139  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42814019 ggttaaaatttacaatcaatttgtatttctaacatatataatattcattc 42814068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 25654452 - 25654521
Alignment:
Q  121 acatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaataatgag 190  Q
    ||||||||||||||||||||| | ||||||  || |||||||  ||||||||||||||||||||||||||    
T  25654452 acatatataatattcattctcgcgtgacatgtatgactcaaataatcatatttaatacatgaataatgag 25654521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 7371721 - 7371776
Alignment:
Q  91 gttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatg 146  Q
    |||||||||| ||||||| |||||||||||||||||||||||||  ||||||||||    
T  7371721 gttaaaatttgcaatcaatttgtatttctaacatatataatatttgttctcacatg 7371776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 19736496 - 19736456
Alignment:
Q  110 ttgtatttctaacatatataatattcattctcacatgacat 150  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  19736496 ttgtatttctaacatatataatatttattctcacatgacat 19736456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 33293604 - 33293656
Alignment:
Q  93 taaaatttacaatcaaattgtatttctaacatatataatattcattctcacat 145  Q
    |||||||||||||||  |||||||| |||||||||||||||| ||||||||||    
T  33293604 taaaatttacaatcactttgtatttttaacatatataatatttattctcacat 33293656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 24649487 - 24649396
Alignment:
Q  92 ttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaa 183  Q
    |||| |||||||||||   | |||||||| |||| |||||||| |||||||||||| | ||||  |||||||| | ||||||||||||||||    
T  24649487 ttaatatttacaatcactatttatttctagcatacataatatttattctcacatgataatcatgtctcaaagctttatatttaatacatgaa 24649396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 35217525 - 35217624
Alignment:
Q  91 gttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaataatgag 190  Q
    |||||||||||| ||||| |||||| | |||||||||||||||| ||| |||| | |||| ||| | ||||||  |||||||||||  ||||| ||||||    
T  35217525 gttaaaatttacgatcaatttgtatctttaacatatataatatttattatcacgtaacatgcattattcaaagagtcatatttaatgtatgaagaatgag 35217624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 180
Target Start/End: Original strand, 7606558 - 7606628
Alignment:
Q  110 ttgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacat 180  Q
    |||||||| |||||||||||||||| ||||||| ||||||| ||| |||  |||  |||||||||||||||    
T  7606558 ttgtatttttaacatatataatatttattctcatatgacatgcatgactataagagtcatatttaatacat 7606628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 25290196 - 25290117
Alignment:
Q  69 cataatacataatcgtaatatg-gttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatga 147  Q
    ||||||||||||   ||||||| |||||||||||| ||||  |||||||||| |||||||| ||||| | ||||||||||    
T  25290196 cataatacataaatataatatgagttaaaatttaccatcactttgtatttcttacatatatgatattaactctcacatga 25290117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 25546038 - 25546076
Alignment:
Q  112 gtatttctaacatatataatattcattctcacatgacat 150  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  25546038 gtatttgtaacatatataatatttattctcacatgacat 25546076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 42992998 - 42992932
Alignment:
Q  122 catatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaataatg 188  Q
    ||||||||||||| |||||||| |||||| ||| ||||||||  | |||||||||||| ||| ||||    
T  42992998 catatataatatttattctcacgtgacatgcatgactcaaagagttatatttaatacacgaagaatg 42992932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 4897995 - 4898055
Alignment:
Q  123 atatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaa 183  Q
    |||||||||||||||| ||||||| ||| ||| ||||||||  | ||||||||| ||||||    
T  4897995 atatataatattcattttcacatgtcatgcatgactcaaagagtgatatttaatgcatgaa 4898055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 188
Target Start/End: Complemental strand, 43072774 - 43072650
Alignment:
Q  65 gatacataatacataatcgtaatatgg-ttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaag 163  Q
    ||||||||||||||||   ||||| || ||||||||||||| |   || |||||||  ||||||||||||  ||| |||  ||||||  || ||||||||    
T  43072774 gatacataatacataaatataatacggattaaaatttacaacccttttatatttcttccatatataatatatattttcatgtgacatgtataactcaaag 43072675  T
Q  164 catcatatttaatacatgaataatg 188  Q
     ||| ||||||||||||||| ||||    
T  43072674 aatcgtatttaatacatgaagaatg 43072650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 14702864 - 14702931
Alignment:
Q  92 ttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactc 159  Q
    ||||||||||||||||  ||||||| || |||||||||||||||||||||||||||||| ||| ||||    
T  14702864 ttaaaatttacaatcactttgtattacttacatatataatattcattctcacatgacatacatgactc 14702931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 14703149 - 14703216
Alignment:
Q  92 ttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactc 159  Q
    ||||||||||||||||  ||||||| || |||||||||||||||||||||||||||||| ||| ||||    
T  14703149 ttaaaatttacaatcactttgtattacttacatatataatattcattctcacatgacatacatgactc 14703216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 32362248 - 32362160
Alignment:
Q  95 aaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaa 183  Q
    ||||| |||||||  |||||||||| |||||||||||||| |||| || ||||||  ||| | |||||  |||||||||||||||||||    
T  32362248 aaattcacaatcattttgtatttctgacatatataatatttattcacatatgacaagcatgagtcaaataatcatatttaatacatgaa 32362160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 14696681 - 14696736
Alignment:
Q  92 ttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatga 147  Q
    ||||||||||| ||||  ||||||| || |||||||||||||||||||||||||||    
T  14696681 ttaaaatttacgatcactttgtattacttacatatataatattcattctcacatga 14696736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 30838218 - 30838298
Alignment:
Q  104 atcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaa-gcatcatatttaatacatgaa 183  Q
    |||||| |||||||||||| ||||||||| ||||||||| |||| |||||| | |||||   |||||||| ||||||||||    
T  30838218 atcaaaatgtatttctaacttatataataatcattctcatatgagattcatgattcaaacaaatcatattgaatacatgaa 30838298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 185
Target Start/End: Original strand, 28868693 - 28868768
Alignment:
Q  110 ttgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaata 185  Q
    ||||||||||||| |||||||| || ||||||||| || || ||| |||||||||||| |||||||||||||||||    
T  28868693 ttgtatttctaacgtatataatgtttattctcacacgaaatgcatgactcaaagcatcttatttaatacatgaata 28868768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 145
Target Start/End: Complemental strand, 31746628 - 31746593
Alignment:
Q  110 ttgtatttctaacatatataatattcattctcacat 145  Q
    ||||||||||||||||||||||||||||||||||||    
T  31746628 ttgtatttctaacatatataatattcattctcacat 31746593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 145
Target Start/End: Complemental strand, 31763928 - 31763893
Alignment:
Q  110 ttgtatttctaacatatataatattcattctcacat 145  Q
    ||||||||||||||||||||||||||||||||||||    
T  31763928 ttgtatttctaacatatataatattcattctcacat 31763893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 23936681 - 23936627
Alignment:
Q  93 taaaatttacaatcaaattgtatttctaacatatataatattcattctcacatga 147  Q
    |||||||||| || |  ||||||||||||||||||||||||| ||||||||||||    
T  23936681 taaaatttacgatgactttgtatttctaacatatataatatttattctcacatga 23936627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 28462802 - 28462885
Alignment:
Q  68 acataatacataatcgtaatatg-gttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacat 150  Q
    |||||||||||||  |||||| | ||||||| | | |||| | ||||||||||||||||||||| ||| ||| |||||||||||    
T  28462802 acataatacataaatgtaataagagttaaaactgagaatctatttgtatttctaacatatataacatttattttcacatgacat 28462885  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 35677549 - 35677463
Alignment:
Q  97 atttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaa 183  Q
    |||||||||||  |||| |||  ||||||||||||||  ||||||||||||||| ||| ||| |||   | ||||||||||||||||    
T  35677549 atttacaatcactttgttttttgaacatatataatatgtattctcacatgacatgcatgacttaaaaattaatatttaatacatgaa 35677463  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 19056836 - 19056924
Alignment:
Q  95 aaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaa 183  Q
    ||||||||||| |||||||||||| ||||||||||||||||| | | || |||||| ||| | | |||  |||||||||||||||||||    
T  19056836 aaatttacaataaaattgtatttccaacatatataatattcactttaacgtgacatgcatgattaaaataatcatatttaatacatgaa 19056924  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 42874185 - 42874130
Alignment:
Q  90 ggttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacat 145  Q
    ||||||||||||||||||  ||||||||||||| ||||||||||| ||||||||||    
T  42874185 ggttaaaatttacaatcactttgtatttctaacctatataatatttattctcacat 42874130  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 2685466 - 2685551
Alignment:
Q  66 atacataatacataatcgtaatatg-gttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacat 150  Q
    ||||||| |||||||  |||||| | |||||||||||| || |  |||||||||||| |||||||||||| |||||||||||||||    
T  2685466 atacatactacataaatgtaatacgagttaaaatttacgattactttgtatttctaaaatatataatatttattctcacatgacat 2685551  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 8714341 - 8714262
Alignment:
Q  111 tgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaataatgag 190  Q
    |||||||||||||||||||||||| ||||||||||||| | ||| | |||||    |||||||||||||| || ||||||    
T  8714341 tgtatttctaacatatataatatttattctcacatgacttgcatgattcaaatatacatatttaatacataaagaatgag 8714262  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 180
Target Start/End: Complemental strand, 3001090 - 3001020
Alignment:
Q  110 ttgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacat 180  Q
    ||||||||||||||||||||||||||||| |||||||| ||  || |||| ||   |||||||||||||||    
T  3001090 ttgtatttctaacatatataatattcattatcacatgagatgtatgactccaaaagtcatatttaatacat 3001020  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 24537463 - 24537404
Alignment:
Q  91 gttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacat 150  Q
    |||||||||||| ||||  ||||||| | ||||| |||| ||||||||||||||||||||    
T  24537463 gttaaaatttacgatcattttgtattacgaacatttatattattcattctcacatgacat 24537404  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 897682 - 897732
Alignment:
Q  94 aaaatttacaatcaaattgtatttctaacatatataatattcattctcaca 144  Q
    |||||||||||||| ||| ||||| |||||||||| ||||||| |||||||    
T  897682 aaaatttacaatcacattatatttttaacatatattatattcaatctcaca 897732  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 20004356 - 20004254
Alignment:
Q  91 gttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaataatgag 190  Q
    |||||||||||  ||||| || |||||| |||| |||||||||||||| |||||| |||| ||| | | |||   |||||||||||| ||||||  ||||    
T  20004356 gttaaaatttatgatcaatttatatttcgaacacatataatattcattttcacataacatacatgaataaaatagtcatatttaatatatgaattgtgag 20004257  T
Q  191 gtg 193  Q
    |||    
T  20004256 gtg 20004254  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 22398184 - 22398238
Alignment:
Q  90 ggttaaaatttacaatcaaattgtatttctaacatatataatattcattctcaca 144  Q
    |||||||||||||  |||  || ||||| ||||||||||||||||||||||||||    
T  22398184 ggttaaaatttacgctcactttatatttttaacatatataatattcattctcaca 22398238  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 24489109 - 24489181
Alignment:
Q  110 ttgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatga 182  Q
    |||||||| |||| |||||||||||| ||||||||| |||| ||| ||||  ||  || ||||||||||||||    
T  24489109 ttgtatttataacctatataatattctttctcacataacatgcattactcttagagtcttatttaatacatga 24489181  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 38375142 - 38375202
Alignment:
Q  90 ggttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacat 150  Q
    ||||||||||||| |||   || |||||||||||||||||||||| |||| || |||||||    
T  38375142 ggttaaaatttactatctgtttatatttctaacatatataatatttattcgcatatgacat 38375202  T

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Target: scaffold0457 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 2235 - 2327
Alignment:
Q  91 gttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcatcactcaaagcatcatatttaatacatgaa 183  Q
    |||||| ||||||| ||  |||||||| |||||||||||||||| |||||||||| |||| |||  |||||||  ||||| |||||| |||||    
T  2235 gttaaattttacaaccactttgtatttttaacatatataatatttattctcacattacatgcatggctcaaagagtcatagttaatatatgaa 2327  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 137348 - 137412
Alignment:
Q  90 ggttaaaatttacaatcaaattgtatttctaacatatataatattcattctcacatgacattcat 154  Q
    ||||||||||||||||||  || ||||||||| |||||||||||| | |||| || |||||||||    
T  137348 ggttaaaatttacaatcactttatatttctaatatatataatatttactctcgcaagacattcat 137412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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