View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_86 (Length: 248)
Name: NF20730_low_86
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_86 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 43436643 - 43436413
Alignment:
| Q |
16 |
ggatcaattccctaagtggcttcctatcaaccgtgaaacatatctcgacagacttgcactgaggtaagaccttttaaacttcatcgtgacttatannnnn |
115 |
Q |
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| T |
43436643 |
ggatcaattccctaagtggcttcctatcaaccgtgaaacatatctcgacagacttgcactgaggtaagaccttttaaacttca-cgtgacttatattttt |
43436545 |
T |
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| Q |
116 |
nnnnnnncaatctgatgttttttctattccaaaatacgtgtctggtgtatagatatgatcaggaaggagaaccatcccaactagcagctgttgacatttt |
215 |
Q |
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| T |
43436544 |
tatttttcaatctgatgtttttt-tattccaaaatacgtgtctggtgtatagatatgatcaggaaggagaaccatcccagctagcagctgttgacatttt |
43436446 |
T |
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| Q |
216 |
tgtcagcactgttgacccattaaaggagcctcc |
248 |
Q |
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| T |
43436445 |
tgtcagcactgttgacccgttaaaggagcctcc |
43436413 |
T |
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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 13826640 - 13826556
Alignment:
| Q |
16 |
ggatcaattccctaagtggcttcctatcaaccgtgaaacatatctcgacagacttgcactgaggtaagaccttttaaacttcatc |
100 |
Q |
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| T |
13826640 |
ggatcaattccctaagtggcttcctgtcaaccgcgaaacatatctcgacagacttgcactgaggtacagccttttaaacatcatc |
13826556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 13826498 - 13826411
Alignment:
| Q |
161 |
tgtatagatatgatcaggaaggagaaccatcccaactagcagctgttgacatttttgtcagcactgttgacccattaaaggagcctcc |
248 |
Q |
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| T |
13826498 |
tgtacagatatgatcgggaaggagaaccatctcaactagcggctgtcgacatttttgtcagtaccgttgacccgttaaaggagcctcc |
13826411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 9477691 - 9477770
Alignment:
| Q |
166 |
agatatgatcaggaaggagaaccatcccaactagcagctgttgacatttttgtcagcactgttgacccattaaaggagcc |
245 |
Q |
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| T |
9477691 |
agatatgatcgggaaggagaaccttcacagttagcagccgttgacattttcgtcagtactgttgatccgttaaaggagcc |
9477770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 9477262 - 9477312
Alignment:
| Q |
16 |
ggatcaattccctaagtggcttcctatcaaccgtgaaacatatctcgacag |
66 |
Q |
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| T |
9477262 |
ggatcagttccccaagtggcttcctgtgaaccgtgaaacatatctggacag |
9477312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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