View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_88 (Length: 246)
Name: NF20730_low_88
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_88 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 41831617 - 41831844
Alignment:
| Q |
1 |
atttaacaaaatcacaatgccaccctaatgttaatcaaagatgcataaattgaatttattgtttaagatggatgaataagtagagaagaatattattgat |
100 |
Q |
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| T |
41831617 |
atttaacaaaatcacaatgccaccctaatgttaatcaaagatgtataaattgaatttattgtttaagatggatgaataagtagagaagaatattattgat |
41831716 |
T |
|
| Q |
101 |
ggacctgtttccaagtagagaatggaaatggatgatgatttcttcttcttgtgttgagaaagcacctcttttaagatcaggcctcaagtaattgatccat |
200 |
Q |
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| T |
41831717 |
ggacctgtttccaagtagagaatggaaatggatgatgagttcttcttcttgtgttgagaaagcacctcttttaagatcaggcctcaagtaattgatccat |
41831816 |
T |
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| Q |
201 |
cttagcctacaacttttgccacatcttt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
41831817 |
cttagcctacaacttttgccacatcttt |
41831844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 103 - 229
Target Start/End: Original strand, 24359743 - 24359869
Alignment:
| Q |
103 |
acctgtttccaagtagagaatggaaatggatgatgatttcttcttcttgtgttgagaaagcacctcttttaagatcaggcctcaagtaattgatccatct |
202 |
Q |
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||||||||||||| || ||||| ||||| ||||| ||||||||| |||| |||||| ||||| | ||||||||||||||||||||||||||||||||| |
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| T |
24359743 |
acctgtttccaagaagggaatgcaaatgaatgatatgttcttcttcctgtggtgagaatgcaccacgtttaagatcaggcctcaagtaattgatccatct |
24359842 |
T |
|
| Q |
203 |
tagcctacaacttttgccacatctttg |
229 |
Q |
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|| |||||||||||| ||||||||||| |
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| T |
24359843 |
taacctacaactttttccacatctttg |
24359869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 37962950 - 37962865
Alignment:
| Q |
144 |
tcttcttgtgttgagaaagcacctcttttaagatcaggcctcaagtaattgatccatcttagcctacaacttttgccacatctttg |
229 |
Q |
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||||||||| |||||| || |||||||| | |||||||||||||||||| |||||||||| ||| ||||| || ||||| ||||| |
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| T |
37962950 |
tcttcttgttgtgagaatgctcctcttttcaaatcaggcctcaagtaatttatccatcttaacctgcaactcttcccacacctttg |
37962865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 230
Target Start/End: Complemental strand, 9232054 - 9231947
Alignment:
| Q |
123 |
tggaaatggatgatgatttcttcttcttgtgttgagaaagcacctcttttaagatcaggcctcaagtaattgatccatcttagcctacaacttttgccac |
222 |
Q |
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|||||||| ||||||| |||||| ||||||| || || || || | ||||||||||| ||||||||||| ||||| | || | |||||||||||||| |
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| T |
9232054 |
tggaaatgaatgatgagttcttcctcttgtggcgaaaacgcgccgcgcttaagatcaggtctcaagtaattaatccaacgaagacgacaacttttgccac |
9231955 |
T |
|
| Q |
223 |
atctttga |
230 |
Q |
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|||||||| |
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| T |
9231954 |
atctttga |
9231947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 33695409 - 33695348
Alignment:
| Q |
165 |
cctcttttaagatcaggcctcaagtaattgatccatcttagcctacaacttttgccacatct |
226 |
Q |
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||||| |||| ||||||||| || |||||| |||| |||||||||||||| || |||||||| |
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| T |
33695409 |
cctctcttaatatcaggccttaaataattggtccaccttagcctacaactctttccacatct |
33695348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 45438068 - 45438002
Alignment:
| Q |
164 |
acctcttttaagatcaggcctcaagtaattgatccatcttagcctacaacttttgccacatctttga |
230 |
Q |
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||||||||| | ||||||||| |||||||| ||||| || |||||||| || || |||||||||||| |
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| T |
45438068 |
acctctttttaaatcaggccttaagtaattaatccacctaagcctacagctcttaccacatctttga |
45438002 |
T |
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