View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_9 (Length: 611)
Name: NF20730_low_9
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 13 - 594
Target Start/End: Original strand, 28169013 - 28169593
Alignment:
| Q |
13 |
cagagagtgatgtccctattacctgtatctttaaatccttgaaatgtctaagccaaccatcttctacaaacactcgatctaaccaaattgatgattcaat |
112 |
Q |
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| T |
28169013 |
cagagagtgatgtccctattacatgtatctttaaatccttgaaatgtctaagccaaccatcttctacaaacacttgatctaaccaaattgatgattcaaa |
28169112 |
T |
|
| Q |
113 |
tccataccaagtgaattgtctgtccagcaaacaaatttatgtaagtttcatcatagttatccattcaatgaaattcttcatcgcagatgtaatcccttct |
212 |
Q |
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| T |
28169113 |
tccataccaagtgaattgtct-tccagcaaacaaatttatgtaagtttcaccatagttatccattcaatgaaattcttcatcgcagatgtaatcccttct |
28169211 |
T |
|
| Q |
213 |
ttattattctttctttgttcaggttttaaaatttcattaaaatcgccgaacattatcaaaggagatgaggttgacttcttaagttgcttaatatttgtgt |
312 |
Q |
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| T |
28169212 |
ttattattctttctttgttcaggttttaaaatttcattaaaatcgccgaacattatcaaaggagatgaggttgacttcttaagttgcttaatatttgtgt |
28169311 |
T |
|
| Q |
313 |
atcaataattcctttcctcgacaatcgatgatccataaatcaacaaaaaagatagaggaataggtgttatacttttttcaaaaatcaactctccatcaac |
412 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
28169312 |
ataaagaattcctttcctcgacaatcgatgatccataaatcaacaaaaaagatagaggaataggtgttatacttttttcgaaagtcaactctccatcaac |
28169411 |
T |
|
| Q |
413 |
caagatatatctcctatcatccgtaaagcactttaatttcttgaaataacgagtgtcccaagctaatatcaaacatccacttcttccttggcccttaact |
512 |
Q |
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| T |
28169412 |
caagataaatctcctatcatccgtaaagcactttgatttcatgaaataacgagtgtcccaagctaatatcaaacatccacttcttccttggcccttaact |
28169511 |
T |
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| Q |
513 |
cttgatattgtcgctggaaaatgttcccgttccatagtggtggaatttttcaaccattcataaagttttgtttcaacaaact |
594 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28169512 |
cttgatattgtcgctggaaaatgttcccgttccatggtggtggaatttttcaaccattcataaagttttgtttcaacaaact |
28169593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 201 - 592
Target Start/End: Original strand, 8558671 - 8559051
Alignment:
| Q |
201 |
gtaatcccttctttattattctttctttgttcaggttttaaaatttcattaaaatcgccgaacattatcaaaggagatgaggttgacttcttaagttgct |
300 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| ||| |
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| T |
8558671 |
gtaatcccttcattattattctttctttgttcgggttttaaaatttcattaaaatcatcgaacattatcaaaggagatgaaattgtcttcttaagctgcg |
8558770 |
T |
|
| Q |
301 |
taatatttgtgtatcaataattcctttcctcgacaatcgatgatccataaatcaacaaaaaagatagaggaataggtgttatacttttttcaaaaatcaa |
400 |
Q |
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| T |
8558771 |
taatatttgtgt-------------ttcctcgacagtcattgatccataaatcaacaaaaaagatataggaataggcgttgtacttttttcaagaaacaa |
8558857 |
T |
|
| Q |
401 |
ctctccatcaaccaagatatatctcctatcatccgtaaagcactttaatttcttgaaataacgagtgtcccaagctaatatc--aaacatccacttcttc |
498 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |
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| T |
8558858 |
ctctccatcaaccaagatatatctcctatcatccataaagcactttgatttcttgaaataacgagtgtccaaagctaatatcaaaaacctccacttcttc |
8558957 |
T |
|
| Q |
499 |
cttggcccttaactcttgatattgtcgctggaaaatgttcccgttccatagtggtggaatttttcaaccattcataaagttttgtttcaacaaa |
592 |
Q |
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|||||||||||||| |||||||||||||||||||||||| | | |||| | ||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
8558958 |
cttggcccttaacttctgatattgtcgctggaaaatgttcacatcccatggaggtagaatttttcaaccattcataaagttttgtttcagcaaa |
8559051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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