View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_94 (Length: 239)
Name: NF20730_low_94
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_94 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 33595958 - 33596183
Alignment:
| Q |
1 |
tgttctaggtttttcatactttcaactactnnnnnnntgaaataacttcagaaagattgtggtactaatgctttttccgtctttaaattttcgtccttat |
100 |
Q |
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| T |
33595958 |
tgttctagtattttcatactctcaactactaaaaaaatgaaataactgcagaaaggttgcggtactaatgctttttccgtctctaaattttcgtccttat |
33596057 |
T |
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| Q |
101 |
tttaatttatccatctagtcattatacctgtggtattggtactaataattataatttgcgttgacactttgaaagattgcggtgtctgctttgctagctt |
200 |
Q |
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| T |
33596058 |
tttaatttctccgtctagtcgttatacccgtgttattggtactaataattataatttgtgttgacactttgaaagatcgcggtgtctgctttgctagctt |
33596157 |
T |
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| Q |
201 |
tggcgagtggtgttgatggtacaaag |
226 |
Q |
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| T |
33596158 |
tggcgactggtgttgatggtacaaag |
33596183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 33603089 - 33603314
Alignment:
| Q |
1 |
tgttctaggtttttcatactttcaactactnnnnnnntgaaataacttcagaaagattgtggtactaatgctttttccgtctttaaattttcgtccttat |
100 |
Q |
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| T |
33603089 |
tgttctagtattttcatactctcaactactaaaaaaatgaaataactgcagaaaggttgcggtactaatgctttttccgtctctaaattttcgtccttat |
33603188 |
T |
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| Q |
101 |
tttaatttatccatctagtcattatacctgtggtattggtactaataattataatttgcgttgacactttgaaagattgcggtgtctgctttgctagctt |
200 |
Q |
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| T |
33603189 |
tttaatttctccgtctagtcgttatacccgtgttattggtactaataattataatttgtgttgacactttgaaagatcgcggtgtctgctttgctagctt |
33603288 |
T |
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| Q |
201 |
tggcgagtggtgttgatggtacaaag |
226 |
Q |
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| T |
33603289 |
tggcgactggtgttgatggtacaaag |
33603314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 33588786 - 33589011
Alignment:
| Q |
1 |
tgttctaggtttttcatactttcaactactnnnnnnntgaaataacttcagaaagattgtggtactaatgctttttccgtctttaaattttcgtccttat |
100 |
Q |
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|||||||| |||||||||| ||||||||| |||||||||| ||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
33588786 |
tgttctagtattttcatactctcaactactaaaaaaatgaaataactgcagaaaggttgcggtactaatgctttttccgtctctaaattttcgtccttat |
33588885 |
T |
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| Q |
101 |
tttaatttatccatctagtcattatacctgtggtattggtactaataattataatttgcgttgacactttgaaagattgcggtgtctgctttgctagctt |
200 |
Q |
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| T |
33588886 |
tttaatttctccgtctagtcgttataccagtgttattggtactaataattataatttgtgttgacactttgaaagatcacggtgtctgctttgctagctt |
33588985 |
T |
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| Q |
201 |
tggcgagtggtgttgatggtacaaag |
226 |
Q |
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|||||| ||||||||||||||||||| |
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| T |
33588986 |
tggcgactggtgttgatggtacaaag |
33589011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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