View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20730_low_97 (Length: 238)

Name: NF20730_low_97
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20730_low_97
NF20730_low_97
[»] chr7 (4 HSPs)
chr7 (1-221)||(47249622-47249842)
chr7 (1-60)||(46269860-46269919)
chr7 (25-77)||(14966511-14966564)
chr7 (25-77)||(15395983-15396036)
[»] chr8 (6 HSPs)
chr8 (1-68)||(34660355-34660422)
chr8 (11-78)||(44997036-44997103)
chr8 (1-62)||(43097369-43097430)
chr8 (15-78)||(5345218-5345281)
chr8 (23-79)||(26218317-26218373)
chr8 (12-60)||(42279675-42279723)
[»] chr1 (4 HSPs)
chr1 (1-78)||(43626446-43626523)
chr1 (13-85)||(35067601-35067674)
chr1 (1-84)||(26114617-26114701)
chr1 (1-76)||(50547891-50547967)
[»] chr3 (6 HSPs)
chr3 (1-63)||(42724858-42724920)
chr3 (1-60)||(38342200-38342259)
chr3 (13-79)||(43726345-43726412)
chr3 (13-77)||(8601589-8601654)
chr3 (1-54)||(46808703-46808756)
chr3 (43-79)||(39349950-39349986)
[»] chr5 (6 HSPs)
chr5 (1-78)||(29359549-29359626)
chr5 (11-79)||(36340729-36340798)
chr5 (24-79)||(35336172-35336227)
chr5 (13-78)||(10016868-10016934)
chr5 (20-57)||(2606338-2606375)
chr5 (23-78)||(30619414-30619470)
[»] chr2 (1 HSPs)
chr2 (1-79)||(3406555-3406635)
[»] chr6 (1 HSPs)
chr6 (4-78)||(6941350-6941424)
[»] chr4 (1 HSPs)
chr4 (4-79)||(26939294-26939370)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 47249622 - 47249842
Alignment:
Q  1 tatatatttcggaatggttccagattatataattcggactaggggtattttgggaaaaaataaggcgcgtgaggaaagaaataagataggaaaaatatta 100  Q
    |||||||| |||||||||||| ||||||||||| ||||||||||||||||||  ||||||||   |||| ||||||||| ||||| ||||||||||||||    
T  47249622 tatatattccggaatggttccggattatataatccggactaggggtattttgaaaaaaaatagaacgcgcgaggaaagatataaggtaggaaaaatatta 47249721  T
Q  101 gtctttaaataattcatatttgaatcgtgattgggccaaaacatgtgttattaaaaggaaaacaggtctcatcaaggtctattcaaattgtacgatggtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47249722 gtctttaaataattcatatttgaatcgtgattgggccaaaacatgtgttcttaaaaggaaaacaggtctcatcaaggtctactcaaattgtacgatggtt 47249821  T
Q  201 tacttggtctaacaaacaaat 221  Q
    |||||||||||||||||||||    
T  47249822 tacttggtctaacaaacaaat 47249842  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 46269919 - 46269860
Alignment:
Q  1 tatatatttcggaatggttccagattatataattcggactaggggtattttgggaaaaaa 60  Q
    |||||||| |||||| ||| | ||||||||||| ||||||||||||||||||||||||||    
T  46269919 tatatattccggaatagtttcggattatataatccggactaggggtattttgggaaaaaa 46269860  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 14966511 - 14966564
Alignment:
Q  25 ttatataattcggactaggggtattttgg-gaaaaaataaggcgcgtgaggaaa 77  Q
    ||||||||| |||||||||||||||||||  |||||||| |||||| |||||||    
T  14966511 ttatataatccggactaggggtattttggaaaaaaaatagggcgcgcgaggaaa 14966564  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 15395983 - 15396036
Alignment:
Q  25 ttatataattcggactaggggtattttgg-gaaaaaataaggcgcgtgaggaaa 77  Q
    ||||||||| |||||||||||||||||||  |||||||| |||||| |||||||    
T  15395983 ttatataatccggactaggggtattttggaaaaaaaatagggcgcgcgaggaaa 15396036  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 34660422 - 34660355
Alignment:
Q  1 tatatatttcggaatggttccagattatataattcggactaggggtattttgggaaaaaataaggcgc 68  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  34660422 tatatattccggaatggttccggattatataattcggactaggggtattttgggaaaaaatagggcgc 34660355  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 44997103 - 44997036
Alignment:
Q  11 ggaatggttccagattatataattcggactaggggtattttgggaaaaaataaggcgcgtgaggaaag 78  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| ||||||| |||||| ||||||||    
T  44997103 ggaatggttccggattatataatccggactaggggtattttggggaaaaatagggcgcgcgaggaaag 44997036  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 43097369 - 43097430
Alignment:
Q  1 tatatatttcggaatggttccagattatataattcggactaggggtattttgggaaaaaata 62  Q
    |||||||| |||||||||||| ||||| ||||| ||||| | ||||||||||||||||||||    
T  43097369 tatatattccggaatggttccggattagataatccggaccaagggtattttgggaaaaaata 43097430  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 5345218 - 5345281
Alignment:
Q  15 tggttccagattatataattcggactaggggtattttgggaaaaaataaggcgcgtgaggaaag 78  Q
    ||||||| ||||||||||| ||||| | |||||||||||||||||||| |||||| | ||||||    
T  5345218 tggttccggattatataatccggaccaagggtattttgggaaaaaatagggcgcgcggggaaag 5345281  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 26218373 - 26218317
Alignment:
Q  23 gattatataattcggactaggggtattttgggaaaaaataaggcgcgtgaggaaaga 79  Q
    ||||||||| | || |||||||||||||| |||||||||| ||||||||| ||||||    
T  26218373 gattatatattccgaactaggggtatttttggaaaaaatagggcgcgtgaagaaaga 26218317  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 42279675 - 42279723
Alignment:
Q  12 gaatggttccagattatataattcggactaggggtattttgggaaaaaa 60  Q
    |||||| | |||||||||||||  |||||||||||||| ||||||||||    
T  42279675 gaatgggttcagattatataataaggactaggggtattatgggaaaaaa 42279723  T

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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 43626523 - 43626446
Alignment:
Q  1 tatatatttcggaatggttccagattatataattcggactaggggtattttgggaaaaaataaggcgcgtgaggaaag 78  Q
    ||||||||  |||||| |||| ||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||    
T  43626523 tatatattctggaatgtttccggattatataatccggactaggggtattttgggaaaaaatagggcgcgcgaggaaag 43626446  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 35067601 - 35067674
Alignment:
Q  13 aatggttccagattatataattcggactaggggtattttggg-aaaaaataaggcgcgtgaggaaagaaataag 85  Q
    ||||||||| |||||  |||| |||||||||||||||||||| |||||||| |||||| ||||||||| |||||    
T  35067601 aatggttccggattaggtaatccggactaggggtattttgggaaaaaaatagggcgcgcgaggaaagacataag 35067674  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 26114701 - 26114617
Alignment:
Q  1 tatatatttcggaatggttccagattatataattcggactaggggtattttg-ggaaaaaataaggcgcgtgaggaaagaaataa 84  Q
    |||||||| | |||||||||| ||||||||||| || ||||||||||||||| | |||||||| |||| | ||||||||| ||||    
T  26114701 tatatattccagaatggttccggattatataatccgaactaggggtattttgagaaaaaaatagggcgtgcgaggaaagacataa 26114617  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 50547891 - 50547967
Alignment:
Q  1 tatatatttcggaatggttccagattatataattcggactaggggtattttggg-aaaaaataaggcgcgtgaggaa 76  Q
    |||||||||| ||||||||||  |||||||||| || | ||| ||||||||||| |||||||| |||||| ||||||    
T  50547891 tatatatttcagaatggttccgaattatataatccgaattagaggtattttgggaaaaaaatagggcgcgcgaggaa 50547967  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42724858 - 42724920
Alignment:
Q  1 tatatatttcggaatggttccagattatataattcggactaggggtattttgggaaaaaataa 63  Q
    |||||||| |||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||    
T  42724858 tatatattccggaatggttccggattatataatccggactagaggtattttgagaaaaaataa 42724920  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 38342200 - 38342259
Alignment:
Q  1 tatatatttcggaatggttccagattatataattcggactaggggtattttgggaaaaaa 60  Q
    |||||||| |||||||||||| ||||||||||| ||||||||||||||||| | ||||||    
T  38342200 tatatattccggaatggttccggattatataatccggactaggggtattttagaaaaaaa 38342259  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 43726345 - 43726412
Alignment:
Q  13 aatggttccagattatataattcggactaggggtatttt-gggaaaaaataaggcgcgtgaggaaaga 79  Q
    ||||||||| ||||||||||| ||||||| ||||||||| ||||||||||| |||||| |||||||||    
T  43726345 aatggttccggattatataatccggactaagggtattttggggaaaaaatagggcgcgcgaggaaaga 43726412  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 8601654 - 8601589
Alignment:
Q  13 aatggttccagattatataattcggactaggggtattttg-ggaaaaaataaggcgcgtgaggaaa 77  Q
    ||||||||| ||||||||||| ||||||||||||||||||   ||||||||||||||| |||||||    
T  8601654 aatggttccggattatataatccggactaggggtattttgaaaaaaaaataaggcgcgcgaggaaa 8601589  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 46808703 - 46808756
Alignment:
Q  1 tatatatttcggaatggttccagattatataattcggactaggggtattttggg 54  Q
    |||||||| |||||||||||| |||||||||||  |||||||||||||||||||    
T  46808703 tatatattccggaatggttccggattatataatctggactaggggtattttggg 46808756  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 39349950 - 39349986
Alignment:
Q  43 gggtattttgggaaaaaataaggcgcgtgaggaaaga 79  Q
    |||||||||||||||||||| ||||||||||||||||    
T  39349950 gggtattttgggaaaaaatagggcgcgtgaggaaaga 39349986  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 29359626 - 29359549
Alignment:
Q  1 tatatatttcggaatggttccagattatataattcggactaggggtattttgggaaaaaataaggcgcgtgaggaaag 78  Q
    |||||||| |||  || |||||||||||||||| |||| ||||||||||||||||||||||| || ||| ||||||||    
T  29359626 tatatattccggtctgtttccagattatataatccggattaggggtattttgggaaaaaatagggtgcgcgaggaaag 29359549  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 36340729 - 36340798
Alignment:
Q  11 ggaatggttccagattatataattcggactaggggtattttgggaaa-aaataaggcgcgtgaggaaaga 79  Q
    ||||||| | ||||||||||||| ||||||||||||||| ||||||| ||||| ||||||||||||||||    
T  36340729 ggaatggattcagattatataatccggactaggggtattatgggaaagaaatagggcgcgtgaggaaaga 36340798  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 35336172 - 35336227
Alignment:
Q  24 attatataattcggactaggggtattttgggaaaaaataaggcgcgtgaggaaaga 79  Q
    |||||||||| ||||||||||||||| |||||||||||| |||||| |||||||||    
T  35336172 attatataatccggactaggggtattatgggaaaaaatagggcgcgcgaggaaaga 35336227  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 10016868 - 10016934
Alignment:
Q  13 aatggttccagattatataattcggactaggggtatttt-gggaaaaaataaggcgcgtgaggaaag 78  Q
    |||||| || |||||| |||| ||||||||||||||||| ||||||||||| |||||| ||||||||    
T  10016868 aatggtcccggattatgtaatccggactaggggtattttggggaaaaaatagggcgcgcgaggaaag 10016934  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 2606338 - 2606375
Alignment:
Q  20 ccagattatataattcggactaggggtattttgggaaa 57  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  2606338 ccagattatataattcggaccaggggtatttttggaaa 2606375  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 30619414 - 30619470
Alignment:
Q  23 gattatataattcggactaggggtattttgggaaaaa-ataaggcgcgtgaggaaag 78  Q
    ||||||||||||| ||||||||||||| ||| ||||| ||| |||||| ||||||||    
T  30619414 gattatataattcagactaggggtattatggaaaaaatatagggcgcgcgaggaaag 30619470  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 3406635 - 3406555
Alignment:
Q  1 tatatatttcggaatggttccagattatataattcggactaggggtattttgggaa--aaaataaggcgcgtgaggaaaga 79  Q
    ||||||||  ||||||||| ||||||||||||| ||||||||||||| ||||||||  |||||| |||||| |||||||||    
T  3406635 tatatattctggaatggttgcagattatataatccggactaggggtagtttgggaaaaaaaatagggcgcgcgaggaaaga 3406555  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 6941350 - 6941424
Alignment:
Q  4 atatttcggaatggttccagattatataattcggactaggggtattttgggaaaaaataaggcgcgtgaggaaag 78  Q
    ||||| |||||||| | | ||||||||||| || ||||||||||||||||| ||||||| |||||| ||||||||    
T  6941350 atattccggaatgggttcggattatataatccgaactaggggtattttggggaaaaatagggcgcgcgaggaaag 6941424  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 26939294 - 26939370
Alignment:
Q  4 atatttcggaatggttccagattatataattcggactaggggtattttgg-gaaaaaataaggcgcgtgaggaaaga 79  Q
    |||||||||||||| | | ||||||||||| |||||||||| |||| |||  |||||||| ||||||||||||||||    
T  26939294 atatttcggaatgggttcggattatataatccggactagggatattatggaaaaaaaatagggcgcgtgaggaaaga 26939370  T

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