View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20731_high_3 (Length: 459)
Name: NF20731_high_3
Description: NF20731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20731_high_3 |
 | |
|
| [»] scaffold0067 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
| [»] scaffold0912 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 441
Target Start/End: Complemental strand, 26028259 - 26027826
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||| ||| |||||||| |
|
|
| T |
26028259 |
agattcttctaatattggatgatgtgtggggagatatcgattttaatgaactagggattccatacagtggcaatcacaaaggctgtaaaattcttgtaac |
26028160 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
| | |||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26028159 |
cgcctgcaatctgttggtgtgcaacagattaggtcgtagtaagacaatccaactagatctcttatctgaagaagacacatggatcatgttccaaaggcat |
26028060 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||| |||||||| || ||||||||||| |||||||||||| |||| ||||||||||||||| |||||||| |
|
|
| T |
26028059 |
gccggtctaagcaaaacttcaactaaaaatttgctcgaaaaaggccgtaaaattgcatatgaatgcaaaatgttaacaattgcaattgctgttatagcca |
26027960 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaacatattgccatgcatggtgttgatgatgaactccttaa |
407 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26027959 |
gtagtttgaagggtgaacaacgtcgggaagagtgggatgtggccttaaattccctgcaaaaacatatgtccatgcatggtgttgatgatgaactccttaa |
26027860 |
T |
|
| Q |
408 |
aatttataaatgcttgcaagttagctatgataat |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
26027859 |
aatttataaatgcttgcaagttagctatgataat |
26027826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 33)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 441
Target Start/End: Original strand, 27961350 - 27961783
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| |||| ||| |||| |
|
|
| T |
27961350 |
agattcttataatattggatgatgtgtggggagatatcgattttaatgaaatagggattccatatcgtgacaatcacaaaggttgtcgaattcttataac |
27961449 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| |
|
|
| T |
27961450 |
cactcgcaataagttggtgtgcaacagattaggatgcagtaaaacaatccaactggatctcttatctgtagaagacgcgtggatgatgttccaaaggcat |
27961549 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
|||| |||||| ||| |||||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27961550 |
gctgatctaagaaaagtttcaactaaagatttgctcgaaaagggccgtaaaatttcaaatgaatgcaaaaggttaccagttgcaattgctgctatagcca |
27961649 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaacatattgccatgcatggtgttgatgatgaactccttaa |
407 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||| || ||||||||||||||||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
27961650 |
gtagtttgaagggcaaacaacgtcgggaagagtgggatgtggccttgaagtccttgcagaaacatatgtccatgcacggtgctgatgatgaactccttaa |
27961749 |
T |
|
| Q |
408 |
aatttataaatgcttgcaagttagctatgataat |
441 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
27961750 |
aatttttaaatgcttgcaagttagctatgataat |
27961783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 441
Target Start/End: Original strand, 28176509 - 28176942
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28176509 |
agattcttctaatattggatgatgtgtggggagacatcgattttaatgaaatagggattccatacagtgacaatcacaaaggctgtagaattcttgtaac |
28176608 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28176609 |
cacgcgcaatctcttggtgtgtaacagattaggatgcagtaagacaatgcaactcgatctgttatctgaagaagacgcatggatcatgttcaaaaggcat |
28176708 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
|||||||| ||| ||| ||||||||||| | | || ||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
28176709 |
gctggtcttagcgaaatttcaactaaaaatctgcttgaaaaagggcgtaaaattgcaaatgaatgcaaaaggttaccgattgcaattgctgctatcgcca |
28176808 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaacatattgccatgcatggtgttgatgatgaactccttaa |
407 |
Q |
| |
|
| ||||||||||| |||||||| ||||||||||| ||||||||| |||||||||||| |||| ||||| ||||||||||||||| |||| |
|
|
| T |
28176809 |
gcagtttgaagggcatacaacgtccggaagagtgggaatgggccttaaaatccttgcagaaaaatatgcaaatgcacaatgttgatgatgaactggttaa |
28176908 |
T |
|
| Q |
408 |
aatttataaatgcttgcaagttagctatgataat |
441 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |
|
|
| T |
28176909 |
aatttataaatgcttaaaatttagctatgataat |
28176942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 8 - 441
Target Start/End: Complemental strand, 28514966 - 28514539
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||||||||| | | |||||||| |
|
|
| T |
28514966 |
agattcttctaatattggatgatgtgtggggagatattgattttaatgaaattggtattccatacagtgacaatcacaaaggctgtatagttcttgtaac |
28514867 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
||| |||| ||| | |||||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
28514866 |
cacacgcagtctctcagtgtgcaacaaattaagatgcagtaagacaatccaactggagctcttatctgatgaagaggcatggaccatgttccaaaggcat |
28514767 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||| || || ||||| ||||||||||||||||||||||| ||||||||||||||||| ||| ||| |||| |
|
|
| T |
28514766 |
gctggtctaacagaaatttcaactaaaagtttgcttgacaagggccgtaaaattgcaaatgaatgcaaagggttaccaattgcaatttctgttatcgcca |
28514667 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaacatattgccatgcatggtgttgatgatgaactccttaa |
407 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||||| ||||||||| || |||||||||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
28514666 |
gtagtttgaagggcatacaacatccggaagagtgggatggggccttaaaatctttgcagaaac------ccatgcacggtgttgatgatgaacttgttaa |
28514573 |
T |
|
| Q |
408 |
aatttataaatgcttgcaagttagctatgataat |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
28514572 |
gatttataaatgcttgcaagttagctatgataat |
28514539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 441
Target Start/End: Original strand, 11407276 - 11407709
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| ||||| | | |||||||||||| | |||||| ||| ||||||||||||||| |||||| | |
|
|
| T |
11407276 |
agattcttctaatattggatgatgtgtggggagatatcaattttgacgaaatagggattcctgatagtgactatctcaaaggctgtagaattcttgtacc |
11407375 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
|||||||||||| || ||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
11407376 |
cacgcgcaatctcttagtgtgcaacagattaagatgcagtaagacaatccaattgcatctcttatctgaagaagatgcgtggatcatgttccaaaggcat |
11407475 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
|||||||||||||||| |||| ||||| |||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
11407476 |
gctggtctaagcaaaatttcatctaaattttttctcttaaagggccgtaaaattgcaactgaatgcaaaaggttaccaattgcaattgctgttacagcca |
11407575 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaacatattgccatgcatggtgttgatgatgaactccttaa |
407 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||| |||||| |||||||| ||||||| ||||||||||| |||||||||| ||||||| || ||| ||| |
|
|
| T |
11407576 |
gtagtttgaagggtgagaaacatcgagaagaatgggatatggccttatattcctttcagaaacatatgcccatgcatggcattgatgacgatctcgttag |
11407675 |
T |
|
| Q |
408 |
aatttataaatgcttgcaagttagctatgataat |
441 |
Q |
| |
|
||||| || ||||| | |||||||||||||| |
|
|
| T |
11407676 |
aatttttagctgctttaagtttagctatgataat |
11407709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 8 - 441
Target Start/End: Original strand, 28077886 - 28078319
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||| ||||| ||| ||||||||||||| | |||| ||||||| |||||||||||| |||||||| |
|
|
| T |
28077886 |
agattcttctaatattagatgatgtgtggggagatatcaattttgatgaaatagggattccagatagtggtaatcacagaggctgtagaattcttgtaac |
28077985 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
28077986 |
cactcgcaatctcttggtgtgcaacagattaggatgcagtaagacaattcaactggatctcttatctgaagaagacgcatggatcatgttcgaaagacat |
28078085 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
|| |||||| || ||| |||||| |||| ||| | || ||||| | |||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
28078086 |
gccggtctacgcgaaatttcaaccaaaaatttgattgacaagggccgaaaaattgcaaatgaatgcaaaaggttgccaattgcaattgctgctatcgcca |
28078185 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaacatattgccatgcatggtgttgatgatgaactccttaa |
407 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||||||||| |||||| |||||||||| | |||| || |||||||||||| || |||| |
|
|
| T |
28078186 |
gtagtttgaagggcatacaacgtccggaagagtgggaatgggccttaaaatccttgaagaaacatatgccaatgcctgatgttgatgatgatctagttaa |
28078285 |
T |
|
| Q |
408 |
aatttataaatgcttgcaagttagctatgataat |
441 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| |
|
|
| T |
28078286 |
aatttataaatgcttgaagtttagctatgataat |
28078319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 441
Target Start/End: Complemental strand, 28473947 - 28473520
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||| ||| || || |||||||||||||| ||||| || |||||||| |||||||| |
|
|
| T |
28473947 |
agattcttctaatattggatgatgtgtggggagatattgattttaatgaaattggtatcccatacagtgacaaccacaagggatgtagaattcttgtaac |
28473848 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
|||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
28473847 |
cacgcgcaatctcttagtgtgcaacagattaagatgcagtaagacaatccaactggagctcttatctgatgaagaggcatggaccatgttccaaaggcat |
28473748 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||| || || ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| |
|
|
| T |
28473747 |
gctggtctaacagaaatttcaactaaaagtttgcttgacaagggccgtaaaattgcaaatgaatgcaaagggttaccaattgcaattgctgttatcgcca |
28473648 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaacatattgccatgcatggtgttgatgatgaactccttaa |
407 |
Q |
| |
|
||||||||||||| || || || |||||||||||| ||| |||| |||||||||| || ||||||| |||| ||||||||| || |||| |
|
|
| T |
28473647 |
gtagtttgaagggcatacgacatccggaagagtgggatcgagccataaaatccttgcagacac------ccatgcacggtgctgatgatgagcttgttaa |
28473554 |
T |
|
| Q |
408 |
aatttataaatgcttgcaagttagctatgataat |
441 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| |
|
|
| T |
28473553 |
aatttataaacgcttgaaagttagctatgataat |
28473520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 414
Target Start/End: Original strand, 27908277 - 27908686
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| |||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
27908277 |
agattcttctaatattggatgatgtgtggggaaatattgattttaatgaaattggtattccatacagtgacaatcacaaaggctgtagaattcttataac |
27908376 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
|||||||| ||| || |||||||| | ||||||||||||||||||| |||||||||| ||||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
27908377 |
cacgcgcagtctcttagtgtgcaagaaattaggatgcagtaagacattccaactggagctcttatctgatgaagaggcatggaccatgttccaaaggcat |
27908476 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
| |||||||| ||| ||||||||||| ||| || | ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||| || | |
|
|
| T |
27908477 |
gttggtctaacagaaatttcaactaaaagtttgcttgccaagggccgtaaaattgcaaatgaatgcaaagggttaccaattgcaattgctgttatcgcta |
27908576 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaacatattgccatg---catggtgttgatgatgaactcct |
404 |
Q |
| |
|
||||||||||||| ||||| || |||||||||| ||||||||||| |||| |||||||||||| ||||| ||| |||||||||||| || | |
|
|
| T |
27908577 |
gtagtttgaagggaatacaacatccaaaagagtgggacgtggccttaaaatcctcgcagaaacatatgtccatgaacgatgttgttgatgatgatcttgt |
27908676 |
T |
|
| Q |
405 |
taaaatttat |
414 |
Q |
| |
|
|||||||||| |
|
|
| T |
27908677 |
taaaatttat |
27908686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 441
Target Start/End: Complemental strand, 27465995 - 27465565
Alignment:
| Q |
14 |
ttctaatattggatgatgtgtgg---ggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaaccac |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||| ||| ||||||||||||| | ||||| |||||||||||||||||||| ||| ||||||| |
|
|
| T |
27465995 |
ttctaatattggatgatgtgtggtggggagatatcaattttgatgaaatagggattccacatagtgataatcacaaaggctgtagaattcttataaccac |
27465896 |
T |
|
| Q |
111 |
gcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcatgct |
210 |
Q |
| |
|
|||||| | | ||||||||||| ||||| |||||||| |||| | ||||| || |||||||||||| | |||||||||| ||||||| |||| |||||| |
|
|
| T |
27465895 |
acgcaatgtttcggtgtgcaacaaattagaatgcagtaggacagttcaactagagctcttatctgaaaaggacgcatggaccatgttcaaaagacatgct |
27465796 |
T |
|
| Q |
211 |
ggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagccagta |
310 |
Q |
| |
|
|||||||| ||| ||||| |||| ||| ||| | ||||| |||||||||||||||| |||||| | ||||||||||| ||||||| ||| ||||||| |
|
|
| T |
27465795 |
ggtctaagtgaaatttcaaataaatatttgctcaacaagggccgtaaaattgcaaatgagtgcaaaggattaccaattgccattgctgttattgccagta |
27465696 |
T |
|
| Q |
311 |
gtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaacatattgccatgcatggtgttgatgatgaactccttaaaat |
410 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| |||| | ||||| |
|
|
| T |
27465695 |
gtttgaagggtgaacaacgtcttgaagagtgggatggcgccttaaactccttgcagaaacatatgtccatgtatggtgttgatgatcaactggtgaaaat |
27465596 |
T |
|
| Q |
411 |
ttataaatgcttgcaagttagctatgataat |
441 |
Q |
| |
|
| ||||||||||| | |||||||||||||| |
|
|
| T |
27465595 |
tcataaatgcttgaagtttagctatgataat |
27465565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 374
Target Start/End: Complemental strand, 17750970 - 17750604
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| ||||| || ||||||||||||| | |||| | ||||||| ||||||||||| ||| |||| |
|
|
| T |
17750970 |
agattcttctaatactggatgatgtgtggggagatatcaattttgttgaaatagggattccacaaagtggcgatcacaatggctgtagaattcttataac |
17750871 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
||| |||| | |||||||||| |||| ||||| ||||||||| ||| ||||||| || ||||||||||||||||| || |||| ||||||| |||||||| |
|
|
| T |
17750870 |
cacacgcagtatgttggtgtgtaacaaattagaatgcagtaaaacagtccaactagagctcttatctgaagaagatgcgtggaccatgttcaaaaggcat |
17750771 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| || |||| |
|
|
| T |
17750770 |
gctggtctaagcaaaaattcaactaaaatttttctcgacaagggccgtaaaattgcaaatgaatgcaaaaggttacctattgcaattgctgtcatcgcca |
17750671 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaacatat |
374 |
Q |
| |
|
| ||||||||||| |||||||| ||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
17750670 |
gcagtttgaaggggatacaacgtccggaagagtgggaatgggccttaaattccgtgcagaaacatat |
17750604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 374
Target Start/End: Complemental strand, 19052290 - 19051924
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| ||||| || ||||||||||||| | |||| | ||||||| ||||||||||| ||| |||| |
|
|
| T |
19052290 |
agattcttctaatactggatgatgtgtggggagatatcaattttgttgaaatagggattccacaaagtggcgatcacaatggctgtagaattcttataac |
19052191 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
||| |||| | |||||||||| |||| ||||| ||||||||| ||| ||||||| || ||||||||||||||||| || |||| ||||||| |||||||| |
|
|
| T |
19052190 |
cacacgcagtatgttggtgtgtaacaaattagaatgcagtaaaacagtccaactagagctcttatctgaagaagatgcgtggaccatgttcaaaaggcat |
19052091 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| || |||| |
|
|
| T |
19052090 |
gctggtctaagcaaaaattcaactaaaatttttctcgacaagggccgtaaaattgcaaatgaatgcaaaaggttacctattgcaattgctgtcatcgcca |
19051991 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaacatat |
374 |
Q |
| |
|
| ||||||||||| |||||||| ||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
19051990 |
gcagtttgaaggggatacaacgtccggaagagtgggaatgggccttaaattccgtgcagaaacatat |
19051924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 14 - 441
Target Start/End: Original strand, 28045931 - 28046346
Alignment:
| Q |
14 |
ttctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaaccacgcg |
113 |
Q |
| |
|
|||| ||||||||||||||||||| | |||| ||||| || |||||||||||| |||||||||||||| || |||||| ||| ||||||| || |
|
|
| T |
28045931 |
ttctgatattggatgatgtgtgggatgttatcaattttgataaaatagggattcc------tgacaatcacaaagactctagaattcttataaccacacg |
28046024 |
T |
|
| Q |
114 |
caatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcatgctggt |
213 |
Q |
| |
|
||| || | || ||||||||||||||||||| |||||||||||||||| | |||||| ||| ||||| ||||||| ||||||||||||| |||||||| |
|
|
| T |
28046025 |
caaactctctgtctgcaacagattaggatgcaataagacaatccaactgaaggtcttatatgatgaagaagcatggaccatgttccaaaggtatgctggt |
28046124 |
T |
|
| Q |
214 |
ctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagccagtagtt |
313 |
Q |
| |
|
|||| ||| ||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
28046125 |
ctaaaagaaatgtcacctaaaattttgctcgacaagggctgtaaaattgcaaatgaatgcaaagggttaccaattgcaattgctgttatcgccagtagtt |
28046224 |
T |
|
| Q |
314 |
tgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaacatattgccatgcatggtgttgatgatgaactccttaaaattta |
413 |
Q |
| |
|
||||||| ||||| || ||||||||||||| ||||||||| || |||||||||| ||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
28046225 |
tgaagggcatacaacatccggaagagtgggatggggccttaaaatctttgcagaaac------ccatgcacggtgttgatgatgaacttgttaaaattta |
28046318 |
T |
|
| Q |
414 |
taaatgcttgcaagttagctatgataat |
441 |
Q |
| |
|
||||||||||||||| |||||||||||| |
|
|
| T |
28046319 |
taaatgcttgcaagtgagctatgataat |
28046346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 8 - 370
Target Start/End: Original strand, 27950660 - 27951019
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27950660 |
agattcttctaatattggatgatgtgtggggagttatcaattttgatgaaatagggattcctgacagtgacaatcacaaaggctgtagaattcttgtaac |
27950759 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
||| ||||||| ||||| ||||||| ||| ||||||||||||||||||||||| || |||||||||| | ||| ||||||| |||||||||| ||||| |
|
|
| T |
27950760 |
cactcgcaatcccttggtatgcaacaaattgggatgcagtaagacaatccaactcgagctcttatctgttggagaggcatggaccatgttccaatggcat |
27950859 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
|||| ||||| ||||| ||||||||||| ||| ||||| ||||| ||| |||||||||||| |||||| | ||||||||||||||| ||| ||| |||| |
|
|
| T |
27950860 |
gctgatctaaacaaaatttcaactaaaagtttgctcgacaagggccgtagaattgcaaatgagtgcaaaggtttaccaattgcaatttctgttatcgcca |
27950959 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaac |
370 |
Q |
| |
|
||||||||||| | |||| || |||| |||||| | ||||||||| ||||||||||||| |
|
|
| T |
27950960 |
gtagtttgaagagcaaaca---tccggaagtgtgggacgaggccttaaaatccttgcagaaac |
27951019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 8 - 356
Target Start/End: Complemental strand, 27436373 - 27436025
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||||||||| ||||| ||| ||||||||||||| | | | ||| |||||||||||||||||| |||||||| |
|
|
| T |
27436373 |
agattcttctaatattagatgatgtgtgtggagatatcaattttcatgaaatagggattccagatatttacagtcacaaaggctgtagaattcttgtaac |
27436274 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
|||| ||| | | || |||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||| |
|
|
| T |
27436273 |
cacgtgcattttcttagtgtgcaagagattaagatgcagtaagacaatccaactggatttcttatctgaagaagaagcctggatcatgttccaaaggtgg |
27436174 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
||||||||||| ||| ||||| | ||| ||| || || ||||| |||||||| |||||||||||| | | |||||||||||||||||| ||||||||| |
|
|
| T |
27436173 |
gctggtctaagtgaaatttcaaatcaaagtttgcttgacaagggtcgtaaaattacaaatgaatgcagaggattaccaattgcaattgctactatagcca |
27436074 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaa |
356 |
Q |
| |
|
|||| || | |||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
27436073 |
gtagattaatgggtgagcaacgtctagaagtatgggatgtggccttaaa |
27436025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 8 - 441
Target Start/End: Original strand, 28128441 - 28128862
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||| | |||||||||| || |||||||||||| |||||||||||||| ||||||||| |||||||| |
|
|
| T |
28128441 |
agattcttctaatattggatgatgtgtgggatgttatcgattttgataaaatagggattcc------tgacaatcacaaagactgtagaattcttgtaac |
28128534 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
|||||||||||| | || ||||||||||||||||||| |||||||||||||||||| |||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
28128535 |
cacgcgcaatctctatgtctgcaacagattaggatgcaataagacaatccaactggaggtcttatctgatgaagaagcatggaccatgttccaaaggcat |
28128634 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
|||||||||| ||| ||| || || ||| ||||| ||||| | ||||||||||||||||||||| | ||||| ||||||||| || ||| |||| |
|
|
| T |
28128635 |
gctggtctaaaagaaatgtcacctgcaagtttgctcgacaagggccgcaaaattgcaaatgaatgcaaaggattaccggttgcaattgttgttatcgcca |
28128734 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaacatattgccatgcatggtgttgatgatgaactccttaa |
407 |
Q |
| |
|
||||||||||||| |||| || ||| |||||||| |||||||| |||||||| |||| ||||||| ||||||||||| ||| | |||| |
|
|
| T |
28128735 |
gtagtttgaagggcatacaaaatccgaaagtgtgggatggagccttaaaatccttgcaaaaac------ccatgcacggtgttgatgaggaagttgttaa |
28128828 |
T |
|
| Q |
408 |
aatttataaatgcttgcaagttagctatgataat |
441 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
28128829 |
aatttataaatgcttgcatgttagctatgataat |
28128862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 8 - 437
Target Start/End: Original strand, 27997093 - 27997501
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||| ||||| || ||||||||||||| | |||| ||||||||||||||||||||| |||||||| |
|
|
| T |
27997093 |
agattcttataatactggatgatgtgtggggagatatcaattttgttgaaatagggattccacaaagtggcaatcacaaaggctgtagaattcttgtaac |
27997192 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
||| |||| ||| || |||||||||| |||| |||||| ||||||| |||||||||| ||||||||| || || ||||||| ||||||||||||| || |
|
|
| T |
27997193 |
cacacgcagtctcttagtgtgcaacacattaagatgcaataagacagtccaactggaggtcttatctgttgaggaggcatggaccatgttccaaaggtat |
27997292 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
||| ||| ||||||||||| ||| ||||| ||||| |||| ||| |||||||||||||| || ||||| ||||||||| ||||||||||| |
|
|
| T |
27997293 |
tctg---------aaatttcaactaaaagtttgctcgacaagggccgtaatatttcaaatgaatgcaaagggctaccagttgcaattgttgctatagcca |
27997383 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaacatattgccatgcatggtgttgatgatgaactccttaa |
407 |
Q |
| |
|
||||||||||||| ||||| |||| |||| |||||||| ||||||||||| ||||| ||||||| |||||| ||||| ||| |||| |
|
|
| T |
27997384 |
gtagtttgaagggagaacatcgtctagaagtgtgggatgcaaccttaaattccctgcag------------atgcatgatgttgaggatgatctcattaa |
27997471 |
T |
|
| Q |
408 |
aatttataaatgcttgcaagttagctatga |
437 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
27997472 |
agtttataaatgcttgcaagttagctatga |
27997501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 8 - 441
Target Start/End: Original strand, 28142372 - 28142790
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| |||||||||| ||||||||||||| |||||||||||| || |||||||||||| |||||||||||||| ||||||||| |||||||| |
|
|
| T |
28142372 |
agattcttctaatatttgatgatgtgtgggatgatatcgattttgataaaatagggattcc------tgacaatcacaaagactgtagaattcttgtaac |
28142465 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
||| |||| ||| | || ||| ||||||||||||||| ||||| |||||||||||| |||||||||| ||||| ||||||| ||||||||||| |||| |
|
|
| T |
28142466 |
cacacgcagtctctctgtctgccacagattaggatgcaataagaaaatccaactggaggtcttatctgatgaagaagcatggaccatgttccaaacgcat |
28142565 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
|||||||||| ||| ||| ||| || ||| ||||| ||||| ||||||||||||||||||||||| | |||||| |||||||||||| ||| |||| |
|
|
| T |
28142566 |
gctggtctaaaagaaatgtcacctacaagtttgctcgacaagggccgtaaaattgcaaatgaatgcaaaggattaccagttgcaattgctgttatcgcca |
28142665 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaacatattgccatgcatggtgttgatgatgaactccttaa |
407 |
Q |
| |
|
||||||||||||| |||| || ||| |||||||| ||||||||| ||||||||||||| |||||| || |||||| ||| | |||| |
|
|
| T |
28142666 |
gtagtttgaagggcatacaaaatccgaaagtgtgggatggggccttaaaatccttgcagaaac------ccatgcccgg---tgatgaggaagttgttaa |
28142756 |
T |
|
| Q |
408 |
aatttataaatgcttgcaagttagctatgataat |
441 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| |
|
|
| T |
28142757 |
aatttataaatgcttggatgttagctatgataat |
28142790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 26146806 - 26146501
Alignment:
| Q |
19 |
atattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaaccacgcgcaatc |
118 |
Q |
| |
|
|||||||||||||| |||| | || || ||||| ||| |||||||||||| | ||||| ||||||||||| || | | | ||||||||||| ||||||| |
|
|
| T |
26146806 |
atattggatgatgtatgggaaaatctcaattttgatgacatagggattccaaatagtgataatcacaaaggatgcaaagttcttgtaaccacacgcaatc |
26146707 |
T |
|
| Q |
119 |
tgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcatgctggtctaag |
218 |
Q |
| |
|
|| ||| ||||||| | | ||||| | |||||||| ||||| || |||||| |||||||||||||||||||||||||| ||| |||||||| |||||| |
|
|
| T |
26146706 |
tggaggtatgcaacaaaatgggatgtggaaagacaattcaactagagctcttaactgaagaagacgcatggatcatgttcaaaaagcatgctgatctaag |
26146607 |
T |
|
| Q |
219 |
caaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagccagtagtttgaag |
318 |
Q |
| |
|
|| | |||| | |||| | |||| || |||||| |||||||||||| ||| |||||| | |||||| ||||||||||| |||| ||||| ||||||||| |
|
|
| T |
26146606 |
taacaattcatccaaaagtattcttgataagggacgtaaaattgcaattgagtgcaaatgtttaccagttgcaattgctactatcgccagcagtttgaag |
26146507 |
T |
|
| Q |
319 |
ggtgaa |
324 |
Q |
| |
|
|||||| |
|
|
| T |
26146506 |
ggtgaa |
26146501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 28499399 - 28499256
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||| ||| || || |||||||||||||| ||||| || |||||||| |||||||| |
|
|
| T |
28499399 |
agattcttctaatattggatgatgtgtggggagatattgattttaatgaaattggtatcccatacagtgacaaccacaagggttgtagaattcttgtaac |
28499300 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaaga |
151 |
Q |
| |
|
|||||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
28499299 |
cacgcgcaatctcttagtgtgcaacagattaagatgcagtaaga |
28499256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 254 - 441
Target Start/End: Complemental strand, 28493742 - 28493561
Alignment:
| Q |
254 |
gtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagccagtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggcctt |
353 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||| || || || |||||||||||| |||| | |
|
|
| T |
28493742 |
gtaaaattgcaaatgaatgcaaagggttaccaattgcaattgctgttatcgccagtagtttgaagggcatacgacatccggaagagtgggatcgggccct |
28493643 |
T |
|
| Q |
354 |
aaattccttgcagaaacatattgccatgcatggtgttgatgatgaactccttaaaatttataaatgcttgcaagttagctatgataat |
441 |
Q |
| |
|
||| |||||||||| || ||||||| |||| ||||||||| || |||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
28493642 |
aaaatccttgcagacac------ccatgcacggtgctgatgatgagcttgttaaaatttataaacgcttgaaagttagctatgataat |
28493561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 18724959 - 18724634
Alignment:
| Q |
19 |
atattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaaccacgcgcaatc |
118 |
Q |
| |
|
||||||||| ||||||||||| || || ||||| ||| |||||||||||| | ||||| ||||||||||| || | | ||||||||||||| ||||||| |
|
|
| T |
18724959 |
atattggataatgtgtggggaaatctcaattttgatgacatagggattccaaagagtgataatcacaaaggatgcaaagtacttgtaaccacacgcaatc |
18724860 |
T |
|
| Q |
119 |
tgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcatgctggtctaag |
218 |
Q |
| |
|
|| |||| |||||| | | | ||| |||||||| ||||| |||||||| ||||||||| ||||||| |||||| || |||||| ||||| |
|
|
| T |
18724859 |
tgatggtttgcaaccaaatggtatgtgaaaagacaattcaactagatctcttgaatgaagaagaggcatggagtatgttcaaattgcatgccaatctaac |
18724760 |
T |
|
| Q |
219 |
caaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagccagtagtttgaag |
318 |
Q |
| |
|
| | ||| | ||| | | ||| | |||||| |||||||||||| |||||||||||| ||||| ||||||||||| || | || || ||||||||| |
|
|
| T |
18724759 |
tgataattcctcccaaagtatcctcaagaagggacgtaaaattgcaactgaatgcaaaagactaccagttgcaattgctactgttgctagcagtttgaag |
18724660 |
T |
|
| Q |
319 |
ggtgaacaacgtcgcgaagagtggga |
344 |
Q |
| |
|
|| || |||| || ||||||||||| |
|
|
| T |
18724659 |
ggacaaaaacgccgtgaagagtggga |
18724634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 358
Target Start/End: Complemental strand, 26118679 - 26118469
Alignment:
| Q |
148 |
aagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcatgctggtctaagcaaaacttcaactaaaatttttctcgaaa |
247 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||| |||| |||||||||| ||| | |||| | ||||||||| | ||| | |||| | |||||| | |
|
|
| T |
26118679 |
aagacaattcaactggagctcttaactgaagaagaagcattgatcatgttcaaaatgtatgccgatctaagcaatatttcctccaaaagtattctcggta |
26118580 |
T |
|
| Q |
248 |
agggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagccagtagtttgaagggtgaacaacgtcgcgaagagtgggatgt |
347 |
Q |
| |
|
||| | | |||| ||| | ||||||||| |||||| ||||||||||| ||| ||||| ||||||||||| || || |||| |||||||||||||| |
|
|
| T |
26118579 |
aggtacatgaaatcacaactttatgcaaaagattaccagttgcaattgctattattgccagaagtttgaagggaaaaaaaagtcgtgaagagtgggatgt |
26118480 |
T |
|
| Q |
348 |
ggccttaaatt |
358 |
Q |
| |
|
||||| |||| |
|
|
| T |
26118479 |
tgccttgaatt |
26118469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 358
Target Start/End: Complemental strand, 26240943 - 26240733
Alignment:
| Q |
148 |
aagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcatgctggtctaagcaaaacttcaactaaaatttttctcgaaa |
247 |
Q |
| |
|
|||||||| |||||||| |||||| |||||||||| |||| |||||||||| ||| | |||| | ||||||| | | ||| | |||| | |||||| | |
|
|
| T |
26240943 |
aagacaattcaactggagctcttaactgaagaagaagcattgatcatgttcgaaatgtatgccgatctaagccatatttcctccaaaagtattctcggta |
26240844 |
T |
|
| Q |
248 |
agggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagccagtagtttgaagggtgaacaacgtcgcgaagagtgggatgt |
347 |
Q |
| |
|
||| | || |||| ||| | ||||||||| |||||||||||||||||| ||| ||||| ||||||||||| || || || | |||||||||||||| |
|
|
| T |
26240843 |
aggtacgtgaaatcacaactttatgcaaaagattaccaattgcaattgctattatcgccagaagtttgaagggaaaaaaaagtggtgaagagtgggatgt |
26240744 |
T |
|
| Q |
348 |
ggccttaaatt |
358 |
Q |
| |
|
||||| |||| |
|
|
| T |
26240743 |
tgccttgaatt |
26240733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 347
Target Start/End: Original strand, 27369011 - 27369111
Alignment:
| Q |
247 |
aagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagccagtagtttgaagggtgaacaacgtcgcgaagagtgggatg |
346 |
Q |
| |
|
|||||| |||||||||||| |||||||||| | |||||| ||||||||||| || | || || ||||||||||| || || |||| ||||||||||||| |
|
|
| T |
27369011 |
aagggacgtaaaattgcaactgaatgcaaatgtttaccagttgcaattgctactgttgctagcagtttgaagggacaagaatgtcgtgaagagtgggatg |
27369110 |
T |
|
| Q |
347 |
t |
347 |
Q |
| |
|
| |
|
|
| T |
27369111 |
t |
27369111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 18082821 - 18082642
Alignment:
| Q |
19 |
atattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaaccacgcgcaatc |
118 |
Q |
| |
|
||||| ||||||||||||| || | |||||| |||| |||||||||||| | ||||||||||||||| | || | | | ||||||||||| ||||||| |
|
|
| T |
18082821 |
atattagatgatgtgtgggataatcttgattttgatgtcatagggattccaaatagtgacaatcacaaacgatgcaaagttcttgtaaccacacgcaatc |
18082722 |
T |
|
| Q |
119 |
tgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttc |
198 |
Q |
| |
|
|| ||| ||||| | | | | || | |||||||| ||||| ||| ||||| ||||||||| ||||||||| ||||| |
|
|
| T |
18082721 |
tggaggtatgcaaaaaaatggcttgtaaaaagacaattcaacttgatatcttagatgaagaagaggcatggatcttgttc |
18082642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 27342715 - 27342769
Alignment:
| Q |
241 |
ctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattg |
295 |
Q |
| |
|
||||| |||||| |||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
27342715 |
ctcgagaagggaagtaaaattgcaattgaatgcaaaagactaccaattgcaattg |
27342769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 27771855 - 27771933
Alignment:
| Q |
14 |
ttctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctg |
92 |
Q |
| |
|
|||||||||| ||||||||||||| | | || |||||| ||| |||||||||||| | ||||| |||||||||||||| |
|
|
| T |
27771855 |
ttctaatattagatgatgtgtgggaaaaaattgattttgatggcatagggattccacatagtgataatcacaaaggctg |
27771933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 158 - 295
Target Start/End: Complemental strand, 18033203 - 18033066
Alignment:
| Q |
158 |
aactggatctcttatctgaagaagacgcatggatcatgttccaaaggcatgctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaa |
257 |
Q |
| |
|
||||||| || ||||||||||| || || |||| |||||||||| || |||| | | ||||||||| ||| | ||| | | | || ||||||||||| |
|
|
| T |
18033203 |
aactggagcttttatctgaagatgaagcgtggaacatgttccaatggtatgccgatataagcaaaagttccccaaaatatgtgattgataagggatgtaa |
18033104 |
T |
|
| Q |
258 |
aattgcaaatgaatgcaaaaggttaccaattgcaattg |
295 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
18033103 |
aattgcaaaggaatgcaaacaattaccaattgcaattg |
18033066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 27368783 - 27368884
Alignment:
| Q |
19 |
atattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaaccacgcgcaatc |
118 |
Q |
| |
|
|||||||||||||||||| || || || ||||| ||| |||||||||||| | || || ||||||||||| || | | ||||| ||||||| ||||||| |
|
|
| T |
27368783 |
atattggatgatgtgtggagaaatctcaattttgatgacatagggattccaaatagagataatcacaaaggatgcaaattacttataaccacacgcaatc |
27368882 |
T |
|
| Q |
119 |
tg |
120 |
Q |
| |
|
|| |
|
|
| T |
27368883 |
tg |
27368884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 26623221 - 26623270
Alignment:
| Q |
247 |
aagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgc |
296 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| |||||||||| |
|
|
| T |
26623221 |
aagggatgtaaaattgcaaaggaatgcaaacaattaccagttgcaattgc |
26623270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 27402935 - 27402882
Alignment:
| Q |
57 |
aatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaaccac |
110 |
Q |
| |
|
||||||||||||| | | ||||||||||||||||||||| | ||||||||||| |
|
|
| T |
27402935 |
aatagggattccaaaacgggacaatcacaaaggctgtagagttcttgtaaccac |
27402882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 362
Target Start/End: Complemental strand, 26185016 - 26184924
Alignment:
| Q |
270 |
atgcaaaaggttaccaattgcaattgctgctatagccagtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattcctt |
362 |
Q |
| |
|
||||||| | |||||| ||||||||| | |||| ||||| ||||||||||| || ||| ||| | |||||||||| | ||||| |||||||| |
|
|
| T |
26185016 |
atgcaaaggattaccagttgcaattgttactatcgccagaagtttgaagggaaaaaaacatcgtgcagagtgggatcttgccttgaattcctt |
26184924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 362
Target Start/End: Complemental strand, 26213623 - 26213531
Alignment:
| Q |
270 |
atgcaaaaggttaccaattgcaattgctgctatagccagtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattcctt |
362 |
Q |
| |
|
||||||| | |||||| ||||||||| | |||| ||||| ||||||||||| || ||| ||| | |||||||||| | ||||| |||||||| |
|
|
| T |
26213623 |
atgcaaaggattaccagttgcaattgttactatcgccagaagtttgaagggaaaaaaacatcgtgcagagtgggatcttgccttgaattcctt |
26213531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 27772008 - 27772044
Alignment:
| Q |
167 |
tcttatctgaagaagacgcatggatcatgttccaaag |
203 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
27772008 |
tcttatctgaagaagatgcatggatcatgttcaaaag |
27772044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 441
Target Start/End: Complemental strand, 8696315 - 8695882
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||| |||||||||||||||||||||| || |||||||| |
|
|
| T |
8696315 |
agattcttctaatattggatgatgtgtggggagacatcgattttaatgaaattgggattccatacggtgacaatcacaaaggctgtaggattcttgtaac |
8696216 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8696215 |
cacgcgtaatctcttggtgtgtaacagattaggatgcagaaagacaatccaactcgatctcttatctgaagaagacgcatggatcatgttcaaaaggcat |
8696116 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
||||||||| | ||| ||||||||||| ||| || || ||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| |||| |
|
|
| T |
8696115 |
gctggtctacacgaaatttcaactaaaaatttgcttgacaagggccgaaaaattgcaaatgaatgcaaaaggttgccaattgcaattactgctatcgcca |
8696016 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaacatattgccatgcatggtgttgatgatgaactccttaa |
407 |
Q |
| |
|
||||||||||||| | |||||| ||||||||||| ||||||||| | ||||||||||||||| | ||||| |||||||||||| || |||| |
|
|
| T |
8696015 |
gtagtttgaagggcatagaacgtccggaagagtgggaatgggccttaaaattcttgcagaaacatatgccaatgcacaatgttgatgatgatctggttaa |
8695916 |
T |
|
| Q |
408 |
aatttataaatgcttgcaagttagctatgataat |
441 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| |
|
|
| T |
8695915 |
aatttataaatgcttgaagtttagctatgataat |
8695882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 360
Target Start/End: Original strand, 22447 - 22799
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| |||||||| ||||||||||||||||| |||||||| |
|
|
| T |
22447 |
agattcttctaatattggatgatgtgtgggaagatatcgattttgatgaaatagggattccatatagtgacaaccacaaaggctgtagaattcttgtaac |
22546 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
|||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||| |
|
|
| T |
22547 |
cacgcgcaatatcttggtgtgctacagattaggatgcagtaagacaatccaactggatctcttatctaaggaagacgcgtggatcatgttccaaaggcat |
22646 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
|||||| ||||||||||||| | | ||| ||| | |||| || || ||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
22647 |
gctggtttaagcaaaacttcgaatgaaagtttgtttgaaataggccgtgaaattgcaaatgaatgcaaaaggttaccagttgcaattgctgttatagcca |
22746 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattcc |
360 |
Q |
| |
|
||| |||| |||| |||||| || |||||||| ||| ||||||||||||| |
|
|
| T |
22747 |
gtaatttggagggcaaacaacatcataaagagtggaatgaggccttaaattcc |
22799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 441
Target Start/End: Complemental strand, 9331893 - 9331454
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||||||| ||||| || ||||||||||||| | ||| |||||||||||| |||||||| ||| |||| |
|
|
| T |
9331893 |
agattcttctaatacttgatgatgtgtggggagatatcaattttgttgaaatagggattccacaaagtcgcaatcacaaaggttgtagaattcttataac |
9331794 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
||| |||||| ||||||||||||||| ||||| ||||||||||||| ||||||| || ||||||||||||||||| || |||| ||||||| |||| || |
|
|
| T |
9331793 |
cacacgcaatatgttggtgtgcaacaaattagaatgcagtaagacagtccaactagagctcttatctgaagaagatgcgtggaccatgttcaaaagttat |
9331694 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
||| |||||||| ||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| |||||||||||||||| |||| |
|
|
| T |
9331693 |
gcttgtctaagcgaaatttcaactaaaatttttctcgacaagggccataaaattgcaaatgaatgcaaaagtttaccagttgcaattgctgctatcgcca |
9331594 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaacatattgccatgca------tggtgttgatgatgaact |
401 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||||| ||||||||| ||||||||||||||||| | ||||| || |||||||||||| | |
|
|
| T |
9331593 |
gtagtttgaagggcatacaatgtccggaagagtgggatggggccttaaaatccttgcagaaacatatgccaatgcacgatgttgatgttgatgatgatat |
9331494 |
T |
|
| Q |
402 |
ccttaaaatttataaatgcttgcaagttagctatgataat |
441 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||||| |
|
|
| T |
9331493 |
ggttaaaatttatgaatgcttgaagtttagctatgataat |
9331454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 441
Target Start/End: Complemental strand, 9385676 - 9385237
Alignment:
| Q |
8 |
agattattctaatattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaac |
107 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||||||| ||||| || ||||||||||||| | ||| |||||||||||| |||||||| ||| |||| |
|
|
| T |
9385676 |
agattcttctaatacttgatgatgtgtggggagatatcaattttgttgaaatagggattccacaaagtcgcaatcacaaaggttgtagaattcttataac |
9385577 |
T |
|
| Q |
108 |
cacgcgcaatctgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcat |
207 |
Q |
| |
|
||| |||||| ||||||||||||||| ||||| ||||||||||||| ||||||| || ||||||||||||||||| || |||| ||||||| |||| || |
|
|
| T |
9385576 |
cacacgcaatatgttggtgtgcaacaaattagaatgcagtaagacagtccaactagagctcttatctgaagaagatgcgtggaccatgttcaaaagttat |
9385477 |
T |
|
| Q |
208 |
gctggtctaagcaaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagcca |
307 |
Q |
| |
|
||| |||||||| ||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| |||||||||||||||| |||| |
|
|
| T |
9385476 |
gcttgtctaagcgaaatttcaactaaaatttttctcgacaagggccataaaattgcaaatgaatgcaaaagtttaccagttgcaattgctgctatcgcca |
9385377 |
T |
|
| Q |
308 |
gtagtttgaagggtgaacaacgtcgcgaagagtgggatgtggccttaaattccttgcagaaacatattgccatgca------tggtgttgatgatgaact |
401 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||||| ||||||||| ||||||||||||||||| | ||||| || |||||||||||| | |
|
|
| T |
9385376 |
gtagtttgaagggcatacaatgtccggaagagtgggatggggccttaaaatccttgcagaaacatatgccaatgcacgatgttgatgttgatgatgatat |
9385277 |
T |
|
| Q |
402 |
ccttaaaatttataaatgcttgcaagttagctatgataat |
441 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||||| |
|
|
| T |
9385276 |
ggttaaaatttatgaatgcttgaagtttagctatgataat |
9385237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 74768 - 74443
Alignment:
| Q |
19 |
atattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaaccacgcgcaatc |
118 |
Q |
| |
|
||||||||||||||||||||| || || ||||| ||| |||||||||||| | ||||| ||||||||||| || | | ||||||||||||| ||||||| |
|
|
| T |
74768 |
atattggatgatgtgtggggaaatctcaattttgatgacatagggattccaaagagtgataatcacaaaggatgcaaagtacttgtaaccacacgcaatc |
74669 |
T |
|
| Q |
119 |
tgttggtgtgcaacagattaggatgcagtaagacaatccaactggatctcttatctgaagaagacgcatggatcatgttccaaaggcatgctggtctaag |
218 |
Q |
| |
|
|| ||| |||||| | | | ||| || | ||| ||||| |||||||| ||||||||| ||||||| |||||| || ||||||| ||||| |
|
|
| T |
74668 |
tgagggtatgcaaccaaatggtatgtgaaaacaaaattcaactagatctcttgaatgaagaagaggcatggagtatgttcaaattgcatgctaatctaac |
74569 |
T |
|
| Q |
219 |
caaaacttcaactaaaatttttctcgaaaagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagccagtagtttgaag |
318 |
Q |
| |
|
| | ||| | ||| | | ||||| |||||| |||||||||||| |||||||||||| ||||| ||||||||||| || | || || ||||||||| |
|
|
| T |
74568 |
tgataattcctcccaaagtatcctcgagaagggacgtaaaattgcaactgaatgcaaaagactaccagttgcaattgctactgttgctagcagtttgaag |
74469 |
T |
|
| Q |
319 |
ggtgaacaacgtcgcgaagagtggga |
344 |
Q |
| |
|
|| || |||| || ||||||||||| |
|
|
| T |
74468 |
ggacaaaaacgccgtgaagagtggga |
74443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0912 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0912
Description:
Target: scaffold0912; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 687 - 586
Alignment:
| Q |
19 |
atattggatgatgtgtggggagatatcgattttaatgtaatagggattccatacagtgacaatcacaaaggctgtagaatacttgtaaccacgcgcaatc |
118 |
Q |
| |
|
||||||||||||||||||||| || || ||||| ||| |||||||||||| | ||||| ||||||||||| || | | ||||||||||||| ||||||| |
|
|
| T |
687 |
atattggatgatgtgtggggaaatctcaattttgatgacatagggattccaaagagtgataatcacaaaggatgcaaattacttgtaaccacacgcaatc |
588 |
T |
|
| Q |
119 |
tg |
120 |
Q |
| |
|
|| |
|
|
| T |
587 |
tg |
586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0912; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 247 - 344
Target Start/End: Complemental strand, 459 - 362
Alignment:
| Q |
247 |
aagggatgtaaaattgcaaatgaatgcaaaaggttaccaattgcaattgctgctatagccagtagtttgaagggtgaacaacgtcgcgaagagtggga |
344 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| ||||| ||||||||||| || | || || ||||||||||| || |||| | ||||||||||| |
|
|
| T |
459 |
aagggacgtaaaattgcaactgaatgcaaaagactaccagttgcaattgctactgttgctagcagtttgaagggacaaaaacgccatgaagagtggga |
362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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