View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20731_low_1 (Length: 711)
Name: NF20731_low_1
Description: NF20731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20731_low_1 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 1 - 692
Target Start/End: Complemental strand, 28764820 - 28764130
Alignment:
| Q |
1 |
taatcctccatgatgacctgttcactcaggtcttattattgcttcctgttaaatctcttatgcaactaaagtgcgtttgcaagtcttggaacaccctcat |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28764820 |
taatcctccatgatgacctgttcacccaggtcttattattgcttcctgttaaatctcttatgcaactaaagtgcgtttgcaagtcttggaacaccctcat |
28764721 |
T |
|
| Q |
101 |
ctccagtcccaccttcgttgaattacaccttcagcaatcacaacga---aaaaggcaactattactaacatatctaacatatgtactctcatatgatgat |
197 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |||||| |
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| T |
28764720 |
ctccggtcccaccttcgttgaattacaccttcagcaatcacaacgacgaaaaaggcaactactactaacatat---------gtactctcatacgatgat |
28764630 |
T |
|
| Q |
198 |
aatcgttgtttcgtacccttatccatatgtcgtttactgagtaacacatcaatcacccttgactgccgtagattgatgtacac-----cgattgtagcga |
292 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28764629 |
aatcgttggttcgtacccttatccatatgtcgtttactgagtaacacatcaatcacccttgactgccgtagattgatgtacactgattggattgtagcga |
28764530 |
T |
|
| Q |
293 |
agtagttggttcctgcaatggattgatatgtttgcttggaaagtccgcaaataaacatcaagccatctggtttcgtgtttggaacccagccacagggaat |
392 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
28764529 |
agtagttggttcctgtaatggattgatatgtttgcttggacggtccgcaaataagcatcgagccatctggttccgtgtttggaacccagccacagggaat |
28764430 |
T |
|
| Q |
393 |
atatctgaaaaattaggatctttaaacaaacctcgcaagcgtggatctagcatgctcagatacacatttggttatgacaattcaactggaagttataagg |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28764429 |
atatctgaaaaattaggatctttaaacaaacctcgcaagcgtggatctagcatgctcagatacacatttggttatgacatttcaactggaagttataagg |
28764330 |
T |
|
| Q |
493 |
tggtggggttcgatactagagaggtgaaagttttcagtttgactgataatgtctggagaaatcttccatgtgttccggacaatgcgggcatagtttgctg |
592 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28764329 |
tggtggggttcgatactagagaggtgaaagttttcggtttgactgataatgtctggagaaatcttccatgtgttccggacaatgcgggcatagtttgctg |
28764230 |
T |
|
| Q |
593 |
ggacaacaatgtcaataaaggtgagtatttaagtggcactattaactggttggctattcaaaattggttacaatgtgataaatattgtgaaaatatttct |
692 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28764229 |
ggacaacaatgtcaataaaggtgagtatttaagtggcactattaactggttggctattcaaaattggttacaatgtgataaatattgtgaaaatatttct |
28764130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 360 - 553
Target Start/End: Complemental strand, 19326533 - 19326340
Alignment:
| Q |
360 |
tggtttcgtgtttggaacccagccacagggaatatatctgaaaaattaggatctttaaacaaacctcgcaagcgtggatctagcatgctcagatacacat |
459 |
Q |
| |
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||||||||| | ||||| || ||||| ||| ||||||||||||||| ||||||| |||||| |||||| ||| || | ||| |||||| | ||||| |
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| T |
19326533 |
tggtttcgtatctggaatccggccactggggtaatatctgaaaaattaagatcttttaacaaaactcgcattggtgtatattgcaggctcaggttcacat |
19326434 |
T |
|
| Q |
460 |
ttggttatgacaattcaactggaagttataaggtggtggggttcgatactagagaggtgaaagttttcagtttgactgataatgtctggagaaa |
553 |
Q |
| |
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|||| ||||| ||||||||||||| ||||||||||||| || | |||| |||||||||||||||||||||| ||||||| | |||||||| |
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| T |
19326433 |
ttgggtatgataattcaactggaacttataaggtggtgctcttgagttctagtgaggtgaaagttttcagtttgagtgataatatttggagaaa |
19326340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 18325428 - 18325484
Alignment:
| Q |
42 |
cttcctgttaaatctcttatgcaactaaagtgcgtttgcaagtcttggaacaccctc |
98 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||| || || |||||||||||| |
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|
| T |
18325428 |
cttcctgtgaaatctcttatgcaactaaagtgctgttgtaaatcatggaacaccctc |
18325484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 610 - 652
Target Start/End: Original strand, 29106577 - 29106619
Alignment:
| Q |
610 |
aaggtgagtatttaagtggcactattaactggttggctattca |
652 |
Q |
| |
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|||||| |||||| ||||||||| ||||||||||||||||||| |
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| T |
29106577 |
aaggtgtgtatttgagtggcactcttaactggttggctattca |
29106619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 5437741 - 5437679
Alignment:
| Q |
42 |
cttcctgttaaatctcttatgcaactaaagtgcgtttgcaagtcttggaacaccctcatctcc |
104 |
Q |
| |
|
||||||||||||| |||||||||| | ||||| ||||||||||| |||||||||||||||||| |
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| T |
5437741 |
cttcctgttaaatatcttatgcaaatgaagtgtgtttgcaagtcatggaacaccctcatctcc |
5437679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 295 - 333
Target Start/End: Complemental strand, 18914152 - 18914114
Alignment:
| Q |
295 |
tagttggttcctgcaatggattgatatgtttgcttggaa |
333 |
Q |
| |
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||||||||||||||||||||||||| ||||||| ||||| |
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| T |
18914152 |
tagttggttcctgcaatggattgatttgtttgcgtggaa |
18914114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 553743 - 553804
Alignment:
| Q |
42 |
cttcctgttaaatctcttatgcaactaaagtgcgtttgcaagtcttggaacaccctcatctc |
103 |
Q |
| |
|
||||||||| ||| |||||||| | | ||||| |||||||| || ||||||||||||||||| |
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|
| T |
553743 |
cttcctgttgaatatcttatgcgaatgaagtgtgtttgcaaatcatggaacaccctcatctc |
553804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 497
Target Start/End: Complemental strand, 24254983 - 24254846
Alignment:
| Q |
360 |
tggtttcgtgtttggaacccagccacagggaatatatctgaaaaattaggatctttaaacaaacctcgcaagcgtggatctagcatgctcagatacacat |
459 |
Q |
| |
|
||||||||| | ||||| |||||||| || | ||||||||||||||||||||||| || | |||||||| || || | ||| | || | ||||| |
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|
| T |
24254983 |
tggtttcgtatatggaatccagccactggtataatatctgaaaaattaggatcttttaaagagcctcgcaacggttcatattgcagtcgtagcttcacat |
24254884 |
T |
|
| Q |
460 |
ttggttatgacaattcaactggaagttataaggtggtg |
497 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||||||||| |
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| T |
24254883 |
ttgggtatgataattcaactggaacttataaggtggtg |
24254846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 605 - 657
Target Start/End: Complemental strand, 11339734 - 11339682
Alignment:
| Q |
605 |
caataaaggtgagtatttaagtggcactattaactggttggctattcaaaatt |
657 |
Q |
| |
|
|||||| |||| |||||||||||||||||| |||||||||||||||| |||| |
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|
| T |
11339734 |
caataatggtgcatatttaagtggcactatttactggttggctattcagaatt |
11339682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 326
Target Start/End: Original strand, 3625189 - 3625220
Alignment:
| Q |
295 |
tagttggttcctgcaatggattgatatgtttg |
326 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
3625189 |
tagttggttcctgcaatggattgatatgtttg |
3625220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 161095 - 161148
Alignment:
| Q |
51 |
aaatctcttatgcaactaaagtgcgtttgcaagtcttggaacaccctcatctcc |
104 |
Q |
| |
|
|||||||||||||| | ||||| ||||||||||||||||| ||||| |||||| |
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|
| T |
161095 |
aaatctcttatgcagatgaagtgtgtttgcaagtcttggaaaaccctaatctcc |
161148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 297 - 326
Target Start/End: Complemental strand, 3561608 - 3561579
Alignment:
| Q |
297 |
gttggttcctgcaatggattgatatgtttg |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
3561608 |
gttggttcctgcaatggattgatatgtttg |
3561579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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