View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20731_low_13 (Length: 249)
Name: NF20731_low_13
Description: NF20731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20731_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 20517937 - 20517697
Alignment:
| Q |
1 |
atacaattgaaaatctctttgttcaacatcttgaactttcatatgcaacaacttgacacttcattctaccttcaaacaagtttaatgcaaacaacacata |
100 |
Q |
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| T |
20517937 |
atacaattgaaaatctctttgttcaacatcttgaactttcatatgcaacaacttgacacttcactctaccttcaaacaaatttaatgctaacaacacaca |
20517838 |
T |
|
| Q |
101 |
ttttaaaatatatattttaattcattctatttgattggttaaaattcacattagtccaatcaaaattatactcattttaaaacatatattttaactctcn |
200 |
Q |
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| T |
20517837 |
ttttaaaatatatattttaattcattctatttgattggttaaaattcacattagtccaatcaaaattatactcattttaaaacatatattttaactcact |
20517738 |
T |
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| Q |
201 |
nnnnnngattggttaaaattcatgagtataatcagaattat |
241 |
Q |
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| T |
20517737 |
ttctttgattggttaaaattcatgagtataatcagaattat |
20517697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 13772376 - 13772443
Alignment:
| Q |
84 |
aatgcaaacaacacatattttaaaatatatattttaattcattctatttgattggttaaaattcacat |
151 |
Q |
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| T |
13772376 |
aatgctaacaacacatattttaacatacatttttcaatacattttttttgattgattaaaattcacat |
13772443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 151
Target Start/End: Original strand, 31758705 - 31758733
Alignment:
| Q |
123 |
cattctatttgattggttaaaattcacat |
151 |
Q |
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| T |
31758705 |
cattctatttgattggttaaaattcacat |
31758733 |
T |
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