View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20731_low_2 (Length: 580)
Name: NF20731_low_2
Description: NF20731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20731_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Complemental strand, 45607437 - 45606859
Alignment:
| Q |
1 |
atcaattgtgtctccatttgcctacattttgccataatataaaatttgcagtgcaatcgcaatcacaatttaaaactacgcttataatatttaaggctta |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45607437 |
atcaattatgtcttcatttgcctacattttgccataatataaaattcgcagtgcaatcgcaatcacaatttaaaactacgcttataagatttaaggctta |
45607338 |
T |
|
| Q |
101 |
taggagtaaatgcatggtgttatatggggtgtagtaattgtaaccnnnnnnn--tatggggtgtagtaaaatgaacagttttacacttgaccaacnnnnn |
198 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45607337 |
taggagtaaatgcatggtattatatggggtgtagtaattgtaacaaaaaaaaaatatggggtgtagtaaaatgaacagttttacacttgaccaacaaaaa |
45607238 |
T |
|
| Q |
199 |
nnnttaacagttttacatcttttccttagttttaatatgtttatagtt-----------acaccaaaataaaattgtgatgatcaaattgtaaaccatat |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45607237 |
aaattaacagttttacatcttttccttagttttaatatgtttatagttcagagctagttacaccaaaataaaattgtgatgatcaaaatgtaaaccatat |
45607138 |
T |
|
| Q |
288 |
aataaaaatgtttgataattgcttttgggcggcagagaatgtgttgccaccagacaaaggttgacttgaatatgcacatttccatgattacctcattaac |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45607137 |
aataaaaatgtttgataattgcttttgggcggcagagaatgtattgccaccagacaaaggttgacttgaatatgcacatttccacgattacctcattaac |
45607038 |
T |
|
| Q |
388 |
attttagtcttcttggctagagaataacatgaagtttcatcaactatacattaatttatattgtgtgtgagtactcaagtctcttttcatatctttttaa |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45607037 |
attttagtcttcttggctagagaataacatgaagtttcatcaactatacattaatttatgttgtgtgtgagtactcaagtctcttttcatatctttttaa |
45606938 |
T |
|
| Q |
488 |
caaagaaattaaaattaagcatcaacaaataaagacactaatattcccatctaatgtttaaccgcatgatttatgttttt |
567 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45606937 |
caaagaaa-taaaattaagcatcaacaaataaagacactaatattcccatctaatgtttaaccgcatgatttatgttttt |
45606859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University