View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20731_low_5 (Length: 313)
Name: NF20731_low_5
Description: NF20731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20731_low_5 |
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| [»] scaffold0029 (2 HSPs) |
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| [»] scaffold0755 (1 HSPs) |
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| [»] scaffold0540 (1 HSPs) |
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Alignment Details
Target: scaffold0029 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 20961 - 20764
Alignment:
| Q |
1 |
cctagatctaaaggagaagtaatactaccttttgttgagcttttgattcgggttttgattgaactggttacggtcggtctggatcttatgatgattgagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20961 |
cctagatctaaaggagaagtaatactaccttttg---agcttttgattcggattttgattgaactggttacggtcggtctggatcttatgatgattgagg |
20865 |
T |
|
| Q |
101 |
ctggatcaggctgactgtgattcacgtatgggttgtgttgtacggctgttgaaagctgttgaactccggttacttgatgtgcgattctggcttctgtgtg |
200 |
Q |
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||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20864 |
ctggatcgggctgaccgtgattcgcgtatgggttgtgttgtacggctgttgaaagctgttgaactccggttacttgatgtgcgattctgacttctgtgtg |
20765 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 34702 - 34505
Alignment:
| Q |
1 |
cctagatctaaaggagaagtaatactaccttttgttgagcttttgattcgggttttgattgaactggttacggtcggtctggatcttatgatgattgagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34702 |
cctagatctaaaggagaagtaatactaccttttg---agcttttgattcggattttgattgaactggttacggtcggtctggatcttatgatgattgagg |
34606 |
T |
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| Q |
101 |
ctggatcaggctgactgtgattcacgtatgggttgtgttgtacggctgttgaaagctgttgaactccggttacttgatgtgcgattctggcttctgtgtg |
200 |
Q |
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||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34605 |
ctggatcgggctgaccgtgattcgcgtatgggttgtgttgtacggctgttgaaagctgttgaactccggttacttgatgtgcgattctgacttctgtgtg |
34506 |
T |
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Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 76 - 195
Target Start/End: Original strand, 26552608 - 26552727
Alignment:
| Q |
76 |
ggtctggatcttatgatgattgaggctggatcaggctgactgtgattcacgtatgggttgtgttgtacggctgttgaaagctgttgaactccggttactt |
175 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| ||| |
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| T |
26552608 |
ggtctggatcttatgatgattgaggctggatcggactgactgtgattcacgtacgggttgtgtcgtacggctgttgaaagcggttgaactccggttgctt |
26552707 |
T |
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| Q |
176 |
gatgtgcgattctggcttct |
195 |
Q |
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|||| ||||||||||||||| |
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| T |
26552708 |
gatgagcgattctggcttct |
26552727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 12386593 - 12386671
Alignment:
| Q |
1 |
cctagatctaaaggagaagtaatactaccttttgttgagcttttgattcgggttttgattgaactggttacggtcggtctgg |
82 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||| |||||||||||||| ||| ||| | |||||||||||||||||||| |
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| T |
12386593 |
cctagatctaaaggtgaagtaaaactaccttttg---agcttttgattcggatttggatcgcactggttacggtcggtctgg |
12386671 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 12395286 - 12395364
Alignment:
| Q |
1 |
cctagatctaaaggagaagtaatactaccttttgttgagcttttgattcgggttttgattgaactggttacggtcggtctgg |
82 |
Q |
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|
|||||||||||||| ||||||| ||||||||||| |||||||||||||| ||| ||| | |||||||||||||||||||| |
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| T |
12395286 |
cctagatctaaaggtgaagtaaaactaccttttg---agcttttgattcggatttggatcgcactggttacggtcggtctgg |
12395364 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 34313524 - 34313602
Alignment:
| Q |
1 |
cctagatctaaaggagaagtaatactaccttttgttgagcttttgattcgggttttgattgaactggttacggtcggtctgg |
82 |
Q |
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|
|||||||||||||| ||||||| ||||||||||| |||||||||||||| ||| ||| | |||||||||||||||||||| |
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| T |
34313524 |
cctagatctaaaggtgaagtaaaactaccttttg---agcttttgattcggatttggatcgcactggttacggtcggtctgg |
34313602 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0755 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0755
Description:
Target: scaffold0755; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 1705 - 1646
Alignment:
| Q |
1 |
cctagatctaaaggagaagtaatactaccttttgttgagcttttgattcgggttttgatt |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1705 |
cctagatctaaaggagaagtaatactaccttttgttgagcttttgattcggattttgatt |
1646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 21608204 - 21608145
Alignment:
| Q |
1 |
cctagatctaaaggagaagtaatactaccttttgttgagcttttgattcgggttttgatt |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
21608204 |
cctagatctaaaggagaagtaatactaccttttgttgagcttttgattcggattttgatt |
21608145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 21616832 - 21616773
Alignment:
| Q |
1 |
cctagatctaaaggagaagtaatactaccttttgttgagcttttgattcgggttttgatt |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
21616832 |
cctagatctaaaggagaagtaatactaccttttgttgagcttttgattcggattttgatt |
21616773 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 20979274 - 20979325
Alignment:
| Q |
1 |
cctagatctaaaggagaagtaa-tactaccttttgttgagcttttgattcgg |
51 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20979274 |
cctagatctaaaggagaagtaaatactaccttttgttgagcttttgattcgg |
20979325 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0540 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0540
Description:
Target: scaffold0540; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 2227 - 2278
Alignment:
| Q |
1 |
cctagatctaaaggagaagtaa-tactaccttttgttgagcttttgattcgg |
51 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||||||||||||||||||| |
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|
| T |
2227 |
cctacatctaaaggagaagtaaatactacattttgttgagcttttgattcgg |
2278 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42630499 - 42630532
Alignment:
| Q |
1 |
cctagatctaaaggagaagtaatactaccttttg |
34 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
42630499 |
cctagatctaaaggaggagtaatactaccttttg |
42630532 |
T |
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