View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20731_low_6 (Length: 296)

Name: NF20731_low_6
Description: NF20731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20731_low_6
NF20731_low_6
[»] chr8 (10 HSPs)
chr8 (40-163)||(21566695-21566821)
chr8 (160-280)||(21567080-21567201)
chr8 (83-151)||(8059684-8059752)
chr8 (78-144)||(11928682-11928748)
chr8 (83-144)||(968421-968482)
chr8 (83-144)||(30774692-30774753)
chr8 (83-151)||(22193320-22193388)
chr8 (83-151)||(33727829-33727897)
chr8 (83-151)||(43292392-43292460)
chr8 (83-151)||(43594274-43594342)
[»] chr4 (5 HSPs)
chr4 (83-142)||(6974352-6974411)
chr4 (83-142)||(2184988-2185047)
chr4 (83-144)||(32046620-32046681)
chr4 (86-151)||(46295149-46295214)
chr4 (110-151)||(49576877-49576918)
[»] scaffold0009 (1 HSPs)
scaffold0009 (83-144)||(19803-19864)
[»] chr2 (3 HSPs)
chr2 (83-151)||(4226114-4226182)
chr2 (83-159)||(15825672-15825748)
chr2 (83-151)||(21195632-21195700)
[»] scaffold0126 (1 HSPs)
scaffold0126 (83-146)||(25303-25366)
[»] scaffold0194 (1 HSPs)
scaffold0194 (110-151)||(13029-13070)
[»] chr3 (6 HSPs)
chr3 (83-144)||(10499065-10499126)
chr3 (83-143)||(51903834-51903894)
chr3 (83-145)||(54414274-54414335)
chr3 (111-151)||(14186699-14186739)
chr3 (83-139)||(30715806-30715861)
chr3 (104-144)||(54722802-54722842)
[»] chr7 (8 HSPs)
chr7 (83-151)||(22308108-22308176)
chr7 (83-145)||(24438203-24438265)
chr7 (81-142)||(24444809-24444870)
chr7 (110-146)||(4572280-4572316)
chr7 (83-151)||(26459366-26459434)
chr7 (83-151)||(29785257-29785325)
chr7 (111-159)||(41487403-41487451)
chr7 (83-151)||(43215236-43215304)
[»] chr5 (7 HSPs)
chr5 (83-151)||(11375151-11375219)
chr5 (83-142)||(35982749-35982808)
chr5 (81-146)||(37229058-37229123)
chr5 (83-151)||(25979222-25979290)
chr5 (81-145)||(37235979-37236043)
chr5 (83-151)||(37258322-37258390)
chr5 (83-151)||(43442248-43442316)
[»] chr6 (6 HSPs)
chr6 (83-142)||(10052453-10052512)
chr6 (82-153)||(12253757-12253827)
chr6 (110-151)||(32050339-32050380)
chr6 (83-144)||(33549163-33549224)
chr6 (81-145)||(6385920-6385984)
chr6 (83-151)||(24333981-24334049)
[»] chr1 (7 HSPs)
chr1 (125-159)||(21694487-21694521)
chr1 (83-145)||(50920012-50920074)
chr1 (83-144)||(1205381-1205442)
chr1 (83-144)||(2220031-2220092)
chr1 (83-144)||(16893453-16893514)
chr1 (83-151)||(36371522-36371590)
chr1 (83-151)||(45266886-45266954)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 40 - 163
Target Start/End: Original strand, 21566695 - 21566821
Alignment:
Q  40 tcatataataaaaagtatattaataagaagtacaagtgatatattttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctga 139  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21566695 tcatataataaaaagtatattaaaaagaagtacaagcgatatattttttaagaagcaaaactagctcattcaaattgacattggaaagaatcgaacctga 21566794  T
Q  140 gaccttg---gggagcacactcctaac 163  Q
    |||||||    ||||||||||||||||    
T  21566795 gaccttgagtaggagcacactcctaac 21566821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 160 - 280
Target Start/End: Original strand, 21567080 - 21567201
Alignment:
Q  160 taacaataacaaggaggctaattggtgtggtagtcgtgattttagtgctatatgttctactgatgagcgtaggagtagggtgg-ttggtcctaggcatga 258  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||| ||||||||||||||||||||| ||||||||||||||||    
T  21567080 taacaataacaaggaggctaattggtgtgttagtcgtgatttcagtgttatacgttctactaatgagcgtaggagtagggtggtttggtcctaggcatga 21567179  T
Q  259 tgatttttgtcagtttaattag 280  Q
    |||||||| |||||||||||||    
T  21567180 tgatttttctcagtttaattag 21567201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 8059752 - 8059684
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||| ||||||| ||||||||||| ||||||||||||| |  ||||| ||||||||||||||| ||||    
T  8059752 tttttgaagaagctaaactagctcactcaaattgacatcagggagaatggaacctgagaccttgaggag 8059684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 11928682 - 11928748
Alignment:
Q  78 atatattttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagacct 144  Q
    |||| ||||||||||||  ||| || | ||| |||||||||||||| ||||||||||||||||||||    
T  11928682 atattttttttaagaagttaaattaacccatccaaattgacatcggtaagaatcgaacctgagacct 11928748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 968482 - 968421
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagacct 144  Q
    ||||||||||||| ||| |||| ||   |||||| ||||||| |||||||||||||||||||    
T  968482 ttttttaagaagctaaattagcccacctaaattggcatcggagagaatcgaacctgagacct 968421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 30774692 - 30774753
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagacct 144  Q
    ||||||||||||| ||| ||||||| | |||||| ||||||| | ||||||| |||||||||    
T  30774692 ttttttaagaagctaaattagctcacttaaattggcatcggagaaaatcgaatctgagacct 30774753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 22193320 - 22193388
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||| || ||||||||||||| || | |||||| | ||||| |||||||||||| |||||||| ||||    
T  22193320 tttttgaaaaagcaaaactagcccacttaaattgccttcggagagaatcgaacctaagaccttgaggag 22193388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 33727829 - 33727897
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||||||||||| ||| |||| ||| ||||||||||   ||  |||||||||||||||||||| ||||    
T  33727829 ttttttaagaagctaaattagcccatccaaattgacactagagggaatcgaacctgagaccttgaggag 33727897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 43292392 - 43292460
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||||||||||| ||| ||| ||||  ||||||||| |||| ||||| |||||||||| |||| ||||    
T  43292392 ttttttaagaagctaaattagttcatctaaattgacaccggagagaattgaacctgagatcttgaggag 43292460  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 43594274 - 43594342
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||||||||| | ||| |||| ||| ||||||||||   || ||||||||||||||||||||| ||||    
T  43594274 ttttttaagaaactaaattagcccatccaaattgacactagagagaatcgaacctgagaccttgaggag 43594342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 6974411 - 6974352
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagac 142  Q
    ||||||||||||| ||||||||||||||||||||  || |||||||||||||||||||||    
T  6974411 ttttttaagaagctaaactagctcattcaaattggtattggaaagaatcgaacctgagac 6974352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 2184988 - 2185047
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagac 142  Q
    ||||||||||||| |||||| | |  |||||||| ||||||| |||||||||||||||||    
T  2184988 ttttttaagaagctaaactaaccccctcaaattggcatcggagagaatcgaacctgagac 2185047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 32046620 - 32046681
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagacct 144  Q
    ||||||||||||| |||||| |||||  |||||| || ||||| |||||||||| |||||||    
T  32046620 ttttttaagaagctaaactaactcatctaaattggcaccggaaggaatcgaacccgagacct 32046681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 46295214 - 46295149
Alignment:
Q  86 tttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    |||||||||| |||||||| ||  ||||||| || |||  ||||||||||||||||||||| ||||    
T  46295214 tttaagaagctaaactagcccacccaaattggcaccggggagaatcgaacctgagaccttgaggag 46295149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 49576877 - 49576918
Alignment:
Q  110 caaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||||||||| ||| ||||||||||||||||||||| ||||    
T  49576877 caaattgacattggagagaatcgaacctgagaccttgaggag 49576918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 19803 - 19864
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagacct 144  Q
    ||||||||||||| |||||||| ||  |||||| ||||||||||||||||||| ||||||||    
T  19803 ttttttaagaagctaaactagcccacccaaattaacatcggaaagaatcgaacttgagacct 19864  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 4226182 - 4226114
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||||||||||| ||||||| ||||||||||| ||||| || | |||||||||||| |||||| ||||    
T  4226182 ttttttaagaagctaaactagttcattcaaattaacatcagagataatcgaacctgaaaccttgaggag 4226114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 15825672 - 15825748
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggagcacactcc 159  Q
    ||||||||||||| ||| ||||||| ||||||||||| || | ||||| ||||||||||  | | ||||||||||||    
T  15825672 ttttttaagaagctaaattagctcaatcaaattgacaccgaagagaattgaacctgagatttcgaggagcacactcc 15825748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 21195632 - 21195700
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||||||||||| ||| |||| ||| ||||||||||   ||  |||||||||||||||||||| ||||    
T  21195632 ttttttaagaagctaaattagcccatccaaattgacactagagggaatcgaacctgagaccttgaggag 21195700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 146
Target Start/End: Original strand, 25303 - 25366
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttg 146  Q
    ||||| ||||||| ||| ||||||||||||||||||| | || | |||||||||||||||||||    
T  25303 tttttgaagaagctaaaatagctcattcaaattgacaccagagataatcgaacctgagaccttg 25366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 13029 - 13070
Alignment:
Q  110 caaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||||||||||||| ||||||||||||||||||||| ||||    
T  13029 caaattgacatcggagagaatcgaacctgagaccttgaggag 13070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 10499065 - 10499126
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagacct 144  Q
    ||||| ||||||| ||| |||| ||  ||||||||||||||| |||||||||||||||||||    
T  10499065 tttttgaagaagctaaattagcccacccaaattgacatcggagagaatcgaacctgagacct 10499126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 51903834 - 51903894
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagacc 143  Q
    ||||| ||||||| ||| |||| || ||||||||||| |||| ||||||||||||||||||    
T  51903834 tttttgaagaagctaaattagcccactcaaattgacaccggagagaatcgaacctgagacc 51903894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 54414335 - 54414274
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagacctt 145  Q
    ||||||||||||| ||| ||||||||| |||||||| | ||| ||||||||| ||||||||||    
T  54414335 ttttttaagaagctaaattagctcatttaaattgac-ttggagagaatcgaatctgagacctt 54414274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 14186739 - 14186699
Alignment:
Q  111 aaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||||||| |||| ||||||||||||||||||||| ||||    
T  14186739 aaattgacaccggagagaatcgaacctgagaccttgaggag 14186699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 139
Target Start/End: Complemental strand, 30715861 - 30715806
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctga 139  Q
    ||||||||||||| |||||||| ||| ||||||| || |||| ||||||||||||||    
T  30715861 ttttttaagaagctaaactagcccatccaaattggca-cggagagaatcgaacctga 30715806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 54722842 - 54722802
Alignment:
Q  104 ctcattcaaattgacatcggaaagaatcgaacctgagacct 144  Q
    |||||||||||||| | |||||||||| |||||||||||||    
T  54722842 ctcattcaaattgaaaccggaaagaatggaacctgagacct 54722802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 22308176 - 22308108
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||||||||||| ||| |||||||||||||||  ||||||  |||||||||| | |||||||| ||||    
T  22308176 ttttttaagaagctaaattagctcattcaaatttgcatcggtgagaatcgaacttaagaccttgaggag 22308108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 24438203 - 24438265
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagacctt 145  Q
    ||||||||||||| ||| |||| |||||||||||||| | || ||||||||| |||| |||||    
T  24438203 ttttttaagaagctaaattagcccattcaaattgacaccagagagaatcgaatctgaaacctt 24438265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 24444809 - 24444870
Alignment:
Q  81 tattttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagac 142  Q
    ||||||||||||| | |||||||| |||  ||||||||| |||||||||| |||||| ||||    
T  24444809 tattttttaagaaaccaaactagcccatcaaaattgacaccggaaagaatagaacctaagac 24444870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 4572280 - 4572316
Alignment:
Q  110 caaattgacatcggaaagaatcgaacctgagaccttg 146  Q
    |||||||||| |||| |||||||||||||||||||||    
T  4572280 caaattgacaccggagagaatcgaacctgagaccttg 4572316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 26459366 - 26459434
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||| ||||||| |||||| | | ||||||||| || | || ||||||||||||||||||||| ||||    
T  26459366 tttttgaagaagctaaactaaccccttcaaattggcaccagagagaatcgaacctgagaccttgaggag 26459434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 29785257 - 29785325
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||||||||||| |||||| | |  |||||||| || | ||||||||||||| |||||||||| ||||    
T  29785257 ttttttaagaagctaaactaaccccctcaaattggcaccagaaagaatcgaacatgagaccttgaggag 29785325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 41487451 - 41487403
Alignment:
Q  111 aaattgacatcggaaagaatcgaacctgagaccttggggagcacactcc 159  Q
    |||||| || ||| |||||||||||||||||||||| |||| |||||||    
T  41487451 aaattggcaccgggaagaatcgaacctgagaccttgaggagaacactcc 41487403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 43215304 - 43215236
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||||||||||| |||||| | |  |||||||| |||  || ||||||||||||||||||||| ||||    
T  43215304 ttttttaagaagctaaactaaccccctcaaattggcataagagagaatcgaacctgagaccttgaggag 43215236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 11375151 - 11375219
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||||||||||  ||| || ||||| ||||||||||||||| |||||||||| |||||| ||| ||||    
T  11375151 ttttttaagaagataaattaactcatccaaattgacatcggagagaatcgaacttgagacattgaggag 11375219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 35982808 - 35982749
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagac 142  Q
    ||||||||||||| ||| |||| ||| ||||||  ||||||| |||||||||||||||||    
T  35982808 ttttttaagaagctaaattagcgcatccaaattagcatcggatagaatcgaacctgagac 35982749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 37229123 - 37229058
Alignment:
Q  81 tattttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttg 146  Q
    ||||||||||||||| ||| ||||||||  ||||||| |  ||  |||||||||||||||||||||    
T  37229123 tattttttaagaagctaaattagctcatgtaaattgatactggggagaatcgaacctgagaccttg 37229058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 25979290 - 25979222
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||||||||||| ||| || | |  ||||||||||||  || ||||||||||||||||||||| ||||    
T  25979290 ttttttaagaagctaaattaaccccatcaaattgacataagagagaatcgaacctgagaccttgaggag 25979222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 37236043 - 37235979
Alignment:
Q  81 tattttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagacctt 145  Q
    ||||||||||||||| ||| ||||||| | ||||||| | |||  ||||||||| ||||||||||    
T  37236043 tattttttaagaagctaaattagctcacttaaattgataccggggagaatcgaatctgagacctt 37235979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 37258322 - 37258390
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||||||||||| |||||| | |  ||||||||||| | || |||||||||||||| |||||| ||||    
T  37258322 ttttttaagaagctaaactaaccccctcaaattgacaccagagagaatcgaacctgaaaccttgaggag 37258390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 43442316 - 43442248
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||| ||||| | ||| |||| ||| |||||||||| | || ||||||||||||||||||||| ||||    
T  43442316 tttttgaagaaactaaattagcccatccaaattgacaacagagagaatcgaacctgagaccttgaggag 43442248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 10052512 - 10052453
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagac 142  Q
    ||||||||||| | |||||||||||  |||| ||||||||| ||||||||||| ||||||    
T  10052512 ttttttaagaaactaaactagctcacacaaactgacatcgggaagaatcgaacgtgagac 10052453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 12253827 - 12253757
Alignment:
Q  82 attttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggagca 153  Q
    |||||||||||||  ||| |||||||| |||||||||| | | ||||||||||||| |||||||| ||||||    
T  12253827 attttttaagaagataaattagctcatccaaattgaca-ctggaagaatcgaacctaagaccttgaggagca 12253757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 32050339 - 32050380
Alignment:
Q  110 caaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||||||||||||||||||||| | ||||||||||| ||||    
T  32050339 caaattgacatcggaaagaatcggatctgagaccttgaggag 32050380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 33549224 - 33549163
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagacct 144  Q
    ||||||||||||| ||| |||||||   |||||| |||| || |||||||||||||||||||    
T  33549224 ttttttaagaagctaaattagctcacctaaattggcatccgagagaatcgaacctgagacct 33549163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 6385984 - 6385920
Alignment:
Q  81 tattttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagacctt 145  Q
    ||||||||||||||| ||| |||| ||  ||||||  || |||| ||||||||||||||||||||    
T  6385984 tattttttaagaagctaaattagcccacccaaattagcaccggagagaatcgaacctgagacctt 6385920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 24333981 - 24334049
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||||||||||| |||||||| ||  ||||||| || |||  ||||| ||||||||||||||| ||||    
T  24333981 ttttttaagaagctaaactagcccacccaaattggcaccggtgagaattgaacctgagaccttgaggag 24334049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 21694521 - 21694487
Alignment:
Q  125 aagaatcgaacctgagaccttggggagcacactcc 159  Q
    |||||||||||||||||||||| ||||||||||||    
T  21694521 aagaatcgaacctgagaccttgaggagcacactcc 21694487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 50920074 - 50920012
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagacctt 145  Q
    ||||||||||||| |||||| | | |||||||||||| | || |||||||||||||| |||||    
T  50920074 ttttttaagaagctaaactaaccccttcaaattgacaccagagagaatcgaacctgaaacctt 50920012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 1205381 - 1205442
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagacct 144  Q
    ||||||||||||| |||||||| ||  |||||||| | |||||| |||||||| ||||||||    
T  1205381 ttttttaagaagctaaactagcccacccaaattgataccggaaaaaatcgaacttgagacct 1205442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 2220092 - 2220031
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagacct 144  Q
    ||||| ||||| | ||| |||| |||| |||||||||| ||| |||||||||||||||||||    
T  2220092 tttttgaagaaactaaattagcccatttaaattgacattggagagaatcgaacctgagacct 2220031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 144
Target Start/End: Complemental strand, 16893514 - 16893453
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagacct 144  Q
    ||||| ||||||| ||| |||| || ||||||||||| |||| | |||||||||||||||||    
T  16893514 tttttgaagaagctaaattagcccactcaaattgacaccggagaaaatcgaacctgagacct 16893453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 36371590 - 36371522
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||||||||||| |||||| | |  |||||||| |||| || |||||||||||| |||||||| ||||    
T  36371590 ttttttaagaagctaaactaaccccctcaaattggcatcagagagaatcgaacctcagaccttgaggag 36371522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 45266954 - 45266886
Alignment:
Q  83 ttttttaagaagcaaaactagctcattcaaattgacatcggaaagaatcgaacctgagaccttggggag 151  Q
    ||||| || |||| |||||||| ||| ||||||| || |||  ||||||||||||||||||||| ||||    
T  45266954 tttttgaataagctaaactagcccatccaaattggcaccggggagaatcgaacctgagaccttgaggag 45266886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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