View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20731_low_7 (Length: 276)
Name: NF20731_low_7
Description: NF20731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20731_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 9776118 - 9776384
Alignment:
| Q |
10 |
attattctcgtcagaaaaacataaatagttattattcttatatatagaagatagcttaattaagcaataattaagcaagnnnnnnngttaagcaataatt |
109 |
Q |
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| T |
9776118 |
attattctcgtcagaaaaacataaatagttattattcttatatatagaagatagcttaattaagcaataattaagcaacaaaaaaagttaagcaataatt |
9776217 |
T |
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| Q |
110 |
aatacacactaaaaccatgcagtgtagaattgctgctacggaagttcaatctccggcaccaccgcaacagagtaactccaccacgttccattaacaagct |
209 |
Q |
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| T |
9776218 |
aatacacactaaaaccatgcagtgaagaattgctgctacggaagttcaatctccggcaccaccgcaacagagtaactccaccacgttccattaacaagct |
9776317 |
T |
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| Q |
210 |
ccggcaactcaatctcaccccaaaaatcatcaccaccaccactaccaccagaatcattgctactatc |
276 |
Q |
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| T |
9776318 |
ccggcaactcaatctcaccccaaaaatcatcaccaccaccactaccaccagaatcattgctactatc |
9776384 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 48857030 - 48856996
Alignment:
| Q |
206 |
agctccggcaactcaatctcaccccaaaaatcatc |
240 |
Q |
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| T |
48857030 |
agctccggcaattcaatctcaccccaaaaatcatc |
48856996 |
T |
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