View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20732_high_1 (Length: 328)
Name: NF20732_high_1
Description: NF20732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20732_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 23170819 - 23170964
Alignment:
| Q |
10 |
aagaaaattaaacaaattcttctatcttttttctatcttaattcttaagtttagcttgtaacgtacagcataattatactccggcatttttctatgtgct |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23170819 |
aagaaaattaaacaaattcttctatcttttttctatcttaattcttaagttttggttgtaacgtacgacataattatactccggcatttttctatgtgct |
23170918 |
T |
|
| Q |
110 |
atacttttcctcttcgaaatttctttggtcaaatcaaacgatataa |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23170919 |
atacttttcctcttcgaaatttctttggtcaaatcaaacgatataa |
23170964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 40 - 155
Target Start/End: Original strand, 23186700 - 23186816
Alignment:
| Q |
40 |
ttctatcttaattcttaagttta-gcttgtaacgtacagcataattatactccggcatttttctatgtgctatacttttcctcttcgaaatttctttggt |
138 |
Q |
| |
|
||||||||||| |||||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
23186700 |
ttctatcttaactcttaagtttttgcatgtaatgtatgacataattatactccggcatttttctatgtgctatacttttcgtcttagaaatttctttggt |
23186799 |
T |
|
| Q |
139 |
caaatcaaacgatataa |
155 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
23186800 |
caaataaaacgatataa |
23186816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 23171105 - 23171145
Alignment:
| Q |
270 |
agaactcaattaaataattttaacaaagagtgtgcggatat |
310 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23171105 |
agaattcaattaaataattttaacaaggagtgtgcggatat |
23171145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University