View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20732_high_2 (Length: 229)
Name: NF20732_high_2
Description: NF20732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20732_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 40135812 - 40136005
Alignment:
| Q |
21 |
agccgctaggttcgacaatggcttcattccattttcctcgtcttgcaatccaaacacatccgccgcatccacttctctcaacaagtttcagaaatcgcat |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40135812 |
agccgctaggttcgacaatggcttcattccattttcttcttcttgcaatccaaacacatccgccgcatccacttctctcaacaagtttcagaaatcgcat |
40135911 |
T |
|
| Q |
121 |
tattttcattctcttttctctctattcttcacttcacctcgctaccttcttgcttctccaaggttcggtacgtttcaatgttgtataatttcat |
214 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40135912 |
tattttcattctcttttctctctattcctcacttcacttcgctaccttcttgcttctccaaggttcggtacgtttcaatgttgtataatttcat |
40136005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 40023320 - 40023381
Alignment:
| Q |
97 |
ctcaacaagtttcagaaatcgcattattttcattct-cttttctctctattcttcacttcac |
157 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
40023320 |
ctcaactactttcacaaatcgcattattttcattctccttttctctctattcctcacttcac |
40023381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University