View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20734_high_1 (Length: 889)
Name: NF20734_high_1
Description: NF20734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20734_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 790; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 790; E-Value: 0
Query Start/End: Original strand, 19 - 878
Target Start/End: Complemental strand, 17895635 - 17894779
Alignment:
| Q |
19 |
gtacgagctcttggtgctttgttgagttcgaaaccatggttcatcaagtacaaaggttgggtctcacatttttacactgatgtaattatgtaagtctgaa |
118 |
Q |
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| T |
17895635 |
gtacgagctcttggtgctttgttgagt-cgaaaccatggttcatcaagtacaaaggttgggtctcacatttttacactgatgtaattatgtaagtctgaa |
17895537 |
T |
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| Q |
119 |
gaaatatttgattgaaattgaatacattttattttaaatgtggattcacgaattctaatatagatggtgatggtgatgttgttacccacaaagtaatgtg |
218 |
Q |
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| T |
17895536 |
gaaatatttgattgaaattgaatacattttattttaaatgtggattcacgaattctaatatagatggtgatggtgatgttgttacccacaaagtaatgtg |
17895437 |
T |
|
| Q |
219 |
agcatattttgtaagttaaaacatgtttagcttgtgattgtaaccattaatgtatttgttgatttcataattgtgttgtttgtatggnnnnnnnatagca |
318 |
Q |
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| T |
17895436 |
agcatattttgtaagttaaaatatgtttagcttgtgattgtaaccattaatgtatttgttgatttcatgattgtgttgtttatatggtttttt-atagca |
17895338 |
T |
|
| Q |
319 |
aacacttgatgagataagacatgagaatactggtaatggtgattgtgaatggtgaaggtgttaatgtacgtgatgctaaaggacgactttctacagaagt |
418 |
Q |
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| T |
17895337 |
aacacttgatgagataagacatgagaatactggtaatggtgattgtgaatggtgaaggtgttaatgtacgtgatgctaaaggacgactttctacagaagt |
17895238 |
T |
|
| Q |
419 |
aggggatgcgaatcttggcaattatgtggttgataagaatgcgttaacgatgaagatgtggaatttcaagtaagcgaatatgatgataatgagtctggtg |
518 |
Q |
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| T |
17895237 |
aggggatgcgaatcttggcaattatgtggttgataagaatgcgttaacgatgaagatgtggaatttcaagtaagcgaatatgatgataatgagtctggtg |
17895138 |
T |
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| Q |
519 |
atagtgatagtgattatgttgatggtgaggagtgttttgatagagatgcaaacaacaacgacaccaatgttgatgatttcgacgaaaattcaaatagttt |
618 |
Q |
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| T |
17895137 |
atagtgatagtgattatgtt-atggtgaggagtgttttgacagagatgcaaacaacaacgacaccaatgttgacgatttcgacgaaaattcaaatagttt |
17895039 |
T |
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| Q |
619 |
caatgaatcaacatacaaagatcaaaatctagacgaatcttacttaattgatgatgtaggcgatattgtgaagatggatgtgtttaacttgaaaaatgaa |
718 |
Q |
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| T |
17895038 |
caatgaatcaacatacaaagatcaaaatctagacgaatcttacttaattgatgatgtaggcgatattgtgaagatggatgtgtttaacttgaaaaatgaa |
17894939 |
T |
|
| Q |
719 |
gatgtttcaaagttataatttgttaatcttgaagttgcgtacaagttttacttttggtttgcaaagatgaatggtttagccatccacaaaggtcaggtta |
818 |
Q |
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| T |
17894938 |
gatgtttcaaagttataatttgttaatcttgaagttgcgtacaagttttactcttggtttgcaaagatgaatggtttagccatccacaaaggtcaggtta |
17894839 |
T |
|
| Q |
819 |
ttagaaataagaatggagatgttgttcagcaaacatttatctataatctagaataattta |
878 |
Q |
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| T |
17894838 |
ttagaaataagaatggagatgttgttcagcaaacatttatctataatctagaatgattta |
17894779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 679 - 841
Target Start/End: Original strand, 9386437 - 9386599
Alignment:
| Q |
679 |
cgatattgtgaagatggatgtgtttaacttgaaaaatgaagatgtttcaaagttataatttgttaatcttgaagttgcgtacaagttttacttttggttt |
778 |
Q |
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||||||||| |||||| || ||||||| ||| |||||||||||||||||||| || ||||| | | |||| ||||| ||||| ||||| | |||||| |
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| T |
9386437 |
cgatattgtaaagatgtatatgtttaatttgcaaaatgaagatgtttcaaagctactatttgggagtgttgaggttgcctacaatttttattgttggttc |
9386536 |
T |
|
| Q |
779 |
gcaaagatgaatggtttagccatccacaaaggtcaggttattagaaataagaatggagatgtt |
841 |
Q |
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| T |
9386537 |
gcaaagatgaacggttttgctgtgtggaaaggtcaagtaattaaaaataagaatgaagatgtt |
9386599 |
T |
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