View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20734_high_2 (Length: 449)
Name: NF20734_high_2
Description: NF20734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20734_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Complemental strand, 34260654 - 34260235
Alignment:
| Q |
19 |
taagccagctagaaaacttctacgcaagaatcaagttaaaccatctgatgtggtgggagatattgctagcaatttgagcactccgtgcccttgtgttcgc |
118 |
Q |
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| T |
34260654 |
taagccagctagaaaacttctacgcaagaatcaagttaaaccatctgatgtggtgggagatattgctagcaatttgagcactccgtgcccttgtgttcgc |
34260555 |
T |
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| Q |
119 |
gatgctttatcaccccaaggttcgttggcacttataaataaagattttggtgttctagataatagggaaaatggatgtggaaaaaactgttgcctgtcaa |
218 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34260554 |
aatgctttatcaccccaaggttcgttggcacttgtaaataaagattttggtgttctagataatagggaaaatggatgtggaaaaaactgttgcctgtcaa |
34260455 |
T |
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| Q |
219 |
attctcctaggtttagagaatcaaatctttgttttgagaaagaagaccgttccttgatattgcactgcgttgatgacacggatcttcatggacatagaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34260454 |
attctcctaggtttagagaatcaaatctttgttttgagaaagaagaccgttccttgatattgaactgcgttgatgacacggatcttcatggacatagaaa |
34260355 |
T |
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| Q |
319 |
tgtgagagacaatggcggcgaaagtagtccaaatttggaaactcctagaatgttatctatgaaattcagacctctatcatttgatgatttggtgggacaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34260354 |
tgtgagagacaatggcggcgaaagtagtccaaatttggaaactcctagaatgttatctatgaaattcagacctctatcatttgatgatttggtgggacaa |
34260255 |
T |
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| Q |
419 |
gatatggtagttaggtctct |
438 |
Q |
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|||||||||||||||||||| |
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| T |
34260254 |
gatatggtagttaggtctct |
34260235 |
T |
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