View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20734_high_6 (Length: 329)
Name: NF20734_high_6
Description: NF20734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20734_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 311
Target Start/End: Original strand, 35203503 - 35203801
Alignment:
| Q |
13 |
aatataccaaaaatggtgggatcccttccagaactctacgtatgcaggagctttaacgataactacaatagtaacggtgctcaaatttctaaatttggca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35203503 |
aatataccaaaaatggtgggatcccttcctgaactctacgtatgcgggagctttaacgataactacaatagtaatggtgctcaaatttctaaatttggca |
35203602 |
T |
|
| Q |
113 |
tatggtaatttcaaatctcaatttgtttctagatactatatggtggagcttcctctgctccatctgctcaacatcaatttctgcagcttcctagacacca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35203603 |
tatggtaatttcaaatctcaatttgtttctagatactatatggtggagcttcctctgctccatctgctcaacatcaatttctgcagcttcctagacacca |
35203702 |
T |
|
| Q |
213 |
acaaccagatacattgcttgctggtaaagatcaattttctttccatagtcagagccaatatcttacctcgggtgcaatacaccatgtaacacctgattt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35203703 |
acaaccagatacattgcttgctggtaaagatcaattttctttccatagtcagagccaatatcttacctcgggtgcaatacaccatgtaacacctgattt |
35203801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 829506 - 829461
Alignment:
| Q |
22 |
aaaatggtgggatcccttccagaactctacgtatgcaggagcttta |
67 |
Q |
| |
|
|||||||||||| ||||||| |||| || ||||||||||||||||| |
|
|
| T |
829506 |
aaaatggtgggaccccttcccgaaccctgcgtatgcaggagcttta |
829461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University