View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20734_low_12 (Length: 241)
Name: NF20734_low_12
Description: NF20734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20734_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 1313771 - 1313562
Alignment:
| Q |
15 |
gtgagatgaatcccaaacgtgtgtttttacgtccctccctatccttggacagtttgcatgtgctcatacaacttttgccttcacaactaccgctacatan |
114 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
1313771 |
gtgatatgaatcccaaacgtgtgtttttacgtccctccctatc-ttggacagtttgcatgtgctcatacaacttttgccttcacagccaccgctacatat |
1313673 |
T |
|
| Q |
115 |
nnnnnnaattcctttttgtatagtattgaatatatttttcaagaatgccctctcaaagtatatagtatggaatgtaataagcagtagttttttcttcgtt |
214 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1313672 |
ttttttaattcctttttctatagtattgaatatatttttcaagaatgccctctcaaagtatatagtatggaatgtaataagcagtagttttttcttcctt |
1313573 |
T |
|
| Q |
215 |
acatgcaaatg |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
1313572 |
acatgcaaatg |
1313562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University