View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20734_low_14 (Length: 238)
Name: NF20734_low_14
Description: NF20734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20734_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 36196237 - 36196012
Alignment:
| Q |
1 |
atgggtcgaatagccattttggagatactattcgccaaatcaacctcttacatacttgtacttcattttaggttc---aaataagtgtatctcatttaat |
97 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36196237 |
atgggtcgaataaccattttggagatactattcgccaaatcaacctcttacataattgtacttcattttaggttcttcaaataagtgtatctcatttaat |
36196138 |
T |
|
| Q |
98 |
ttcagggccaatgtgtatggatggccaaacacatacgtgtttacaaaggcacttggggagatgcttgtggagaaattgaaaggaaacttatctgttgtta |
197 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36196137 |
ttcagggccaatgtgtatggttggccaaacacatacgtgtttacaaaggcacttggggagatgcttgtggagaaattgaaaggaaacttatctgttgtta |
36196038 |
T |
|
| Q |
198 |
ttttacgtcctgccattgtcacaagt |
223 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
36196037 |
ttttacgtcctgccattgtcacaagt |
36196012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 36183172 - 36183120
Alignment:
| Q |
113 |
tatggatggccaaacacatacgtgtttacaaaggcacttggggagatgcttgt |
165 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| | || || |||||||| |
|
|
| T |
36183172 |
tatggatggccaaacacatatgtgtttacaaaagcaatgggagaaatgcttgt |
36183120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 19481142 - 19481248
Alignment:
| Q |
113 |
tatggatggccaaacacatacgtgtttacaaaggcacttggggagatgcttgtggagaaattgaaaggaaacttatctgttgttattttacgtcctgcca |
212 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||| | || || |||||||||| | |||||||||||||||| |||||||||||| | ||||| |||| |
|
|
| T |
19481142 |
tatggatggccaaacacatacgtattcacaaaagcaatgggagaaatgcttgtggggcaattgaaaggaaacttgtctgttgttattattcgtccagcca |
19481241 |
T |
|
| Q |
213 |
ttgtcac |
219 |
Q |
| |
|
||||||| |
|
|
| T |
19481242 |
ttgtcac |
19481248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University