View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20734_low_4 (Length: 343)
Name: NF20734_low_4
Description: NF20734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20734_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 42227445 - 42227762
Alignment:
| Q |
1 |
attctttatttgagcatgtaatgcaaagaaaaatgacataattgaataaaaagagtgaagagaaagaattatttagtattcggtattcccatttgcttaa |
100 |
Q |
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| T |
42227445 |
attctttatttgagcatgtaatggaaagaaaaatgacataattgaataaaaagagtgaagagaaagaattatt--------------cccatttgcttaa |
42227530 |
T |
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| Q |
101 |
caatatagaaacaaatgaagaggcatactttgtgtaagttgttgtattgacttttgagcatatgatttggcaaccctttatagaagatgagtactatttt |
200 |
Q |
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| T |
42227531 |
caatatagaaacaaatgaagaggcatactttgtgtcagttggtgtat-gacttttgagcatatgatttggcaaccctttatagaagatgagtacaatttt |
42227629 |
T |
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| Q |
201 |
catgctatgatgttgggtccaaactaattttgttgtatgagttcgaatatctcttgtgctccctttaataaaaagtttgcttatcgaaaataactcatat |
300 |
Q |
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| T |
42227630 |
cctgctatgatgttgggtccaaactaattttgttgtatgagttcgaatatctcttgtactccctttattaaaaagtttgcttatcgaaaataactcatat |
42227729 |
T |
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| Q |
301 |
ttgtatagctccctcagtcacaacttccctttg |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
42227730 |
ttgtatagctccctcagtcacaacttccctttg |
42227762 |
T |
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