View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20735_low_1 (Length: 441)
Name: NF20735_low_1
Description: NF20735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20735_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 23748274 - 23747934
Alignment:
| Q |
13 |
aatatcggatacaggaattgaagcaataaccagttgttgtcctcagctaaaaacattttccgtctactggaacgtgaggtactttgaaaaatttcttaat |
112 |
Q |
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| T |
23748274 |
aatatcggatacaggaattgaagcaataactagttgttgtcctcagctaaaaacattttccgtctactggaacgtgaggtactttgaaaa--ttcttaat |
23748177 |
T |
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| Q |
113 |
gtgccatgtttgatttagcatttgaaaatcttactttggatttacaagtcaatccttagtaacaatactgaaatatgactcttatttcagggtaactgat |
212 |
Q |
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| T |
23748176 |
gacccgtgtttgatttagcatttgaaaatctcactttggatttaaaagtcaatccttagcaacaatactgaa-tatgactcttatttcagggtaactgat |
23748078 |
T |
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| Q |
213 |
actggactactacatacagtgaggaactgtaaacacattgttgatttgaatataagtggttgtaaggtacacgatgccctgtagttgtgattttgtacac |
312 |
Q |
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| T |
23748077 |
actggactactacatacagcgaggaactgcaaacacattgttgatttgaatataagtggttgtaaggtacacgatgcc--gtagttgtgattttgtacgc |
23747980 |
T |
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| Q |
313 |
ttacgttattattgttattattatacgtatcgtacattgtgtgtatatttag |
364 |
Q |
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| T |
23747979 |
ttaggtta------ttatcattacacatatcatacattgtgtgtatatttag |
23747934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 23687333 - 23687119
Alignment:
| Q |
27 |
gaattgaagcaataaccagttgttgtcctcagctaaaaacattttccgtctactggaacgtgaggtactttgaaaaatttcttaatgtgccatgtttgat |
126 |
Q |
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| T |
23687333 |
gaattgaagcaataaccagttgttgtcctcagctagaaacctgttccatctactggaatgtgaggtgcattcaattttttctaaatgtgcaatgtttgat |
23687234 |
T |
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| Q |
127 |
ttagcatttgaaaatcttactttggatttacaagtcaatccttagtaacaatactgaaatatgactcttatttcagggtaactgatactggactactaca |
226 |
Q |
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| T |
23687233 |
tttgcagttgaaaacctcactttggatttaaaagttaatccttagcaacaatactgaaatatgagtcctattacaggataactgataatcgactacttca |
23687134 |
T |
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| Q |
227 |
tacagtgaggaactg |
241 |
Q |
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| T |
23687133 |
tacagtgaggaactg |
23687119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 23743232 - 23743287
Alignment:
| Q |
29 |
attgaagcaataaccagttgttgtcctcagctaaaaacattttccgtctactggaa |
84 |
Q |
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| T |
23743232 |
attgaagcaataaccagttgttgttctcagctataaaccttttccatctactggaa |
23743287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 23721392 - 23721338
Alignment:
| Q |
27 |
gaattgaagcaataaccagttgttgtcctcagcta-aaaacattttccgtctact |
80 |
Q |
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| T |
23721392 |
gaattgaagcaataaccaattgttgtcctcagctagaaaactttttccatctact |
23721338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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