View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20735_low_2 (Length: 361)
Name: NF20735_low_2
Description: NF20735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20735_low_2 |
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| [»] scaffold0640 (2 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 33324335 - 33323994
Alignment:
| Q |
19 |
ccaattcagaccatgaccaacctgtaagagatctaacaaattcaccttcccttccactgatgcaacaaccaaatcctgttcgctcctgcccatgnnnnnn |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| |
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| T |
33324335 |
ccaattcagaccatgaccaacctgtaagagatctaacaaattcaccttcccttccacagatgtaacaaccaaatcttgttcgctcctgcccatgaaaaaa |
33324236 |
T |
|
| Q |
119 |
n-tggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgagacttttaactatgtcatttcgagccaagtttcaaacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33324235 |
actggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgagacttttaactatgtcatttcgagccaagtttcaaacc |
33324136 |
T |
|
| Q |
218 |
tccttccattcagcttgcagcaaaaatactaaattcagaatctgacatgcatttgannnnnnnctggcttcaaatcctctcatttctgtttttcaaaaat |
317 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| |||||||||||||| |
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| T |
33324135 |
tccttacattcagcttgcagcaaaaatactaaattcagaatctgacatgcaattgatttttttctggcttcaaatccactcatttatgtttttcaaaaat |
33324036 |
T |
|
| Q |
318 |
ccatatatcaccatcatcacactactaacaattgcttctgat |
359 |
Q |
| |
|
|| ||||||||||||| ||| ||||||||||||||||||||| |
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|
| T |
33324035 |
ccctatatcaccatcagcactctactaacaattgcttctgat |
33323994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 1042744 - 1042403
Alignment:
| Q |
19 |
ccaattcagaccatgaccaacctgtaagagatctaacaaattcaccttcccttccactgatgcaacaaccaaatcctgttcgctcctgcccatgnnnnnn |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| |
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|
| T |
1042744 |
ccaattcagaccatgaccaacctgtaagagatctaacaaattcaccttcccttccacagatgtaacaaccaaatcttgttcgctcctgcccatgaaaaaa |
1042645 |
T |
|
| Q |
119 |
n-tggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgagacttttaactatgtcatttcgagccaagtttcaaacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1042644 |
actggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgagacttttaactatgtcatttcgagccaagtttcaaacc |
1042545 |
T |
|
| Q |
218 |
tccttccattcagcttgcagcaaaaatactaaattcagaatctgacatgcatttgannnnnnnctggcttcaaatcctctcatttctgtttttcaaaaat |
317 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||| |||||||||||||| |
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|
| T |
1042544 |
tccttacattcagcttgcagcaaaaatactaaattcagaatctgacatgcaattgatttttttctggcttcaaatccactcatttatgtttttcaaaaat |
1042445 |
T |
|
| Q |
318 |
ccatatatcaccatcatcacactactaacaattgcttctgat |
359 |
Q |
| |
|
|| ||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
1042444 |
ccctatatcaccatcagcactctactaacaattgcttctgat |
1042403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 41193816 - 41193468
Alignment:
| Q |
19 |
ccaattcagaccatgaccaacctgtaagagatctaacaaattcaccttcccttccactgatgcaacaaccaaatcctgttcgctcctgcccatgnnnnnn |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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|
| T |
41193816 |
ccaattcagaccatgaccaacctgtaagagatctaacaaattcaccttcccttccacggatgcaacaaacaaatcctgttcgctcctgcccatgaaaaaa |
41193717 |
T |
|
| Q |
119 |
n-tggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgagacttttaactatgtcatttcgagccaagtttcaaacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41193716 |
actggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgagacttttaactatgtcatttcgagccaagtttcaaacc |
41193617 |
T |
|
| Q |
218 |
tccttccattcagcttgcagcaaaaatactaaattcagaatctgacatgcatttga-------nnnnnnnctggcttcaaatcctctcatttctgttttt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| |
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|
| T |
41193616 |
tccttccattcagcttgcagcaaaaatactaaattcagaatctgacatgcatttgattttttttttttttcgtgcttcaaatccactcatttctgttttt |
41193517 |
T |
|
| Q |
311 |
caaaaatccatatatcaccatcatcacactactaacaattgcttctgat |
359 |
Q |
| |
|
||||||||| ||||||||||||| ||| ||||||||||||||||||||| |
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| T |
41193516 |
caaaaatccctatatcaccatcagcactctactaacaattgcttctgat |
41193468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 41408920 - 41408582
Alignment:
| Q |
19 |
ccaattcagaccatgaccaacctgtaagagatctaacaaattcaccttcccttccactgatgcaacaaccaaatcctgttcgctcctgcccatgnnnnnn |
118 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||| ||||||||| ||||||| ||| |||||||||| | |
|
|
| T |
41408920 |
ccaattcagaccatgaccagtctgtaagggatctgacaaatttgccttcccttccacggatgcaacagccaaatcatgtcgactcctgcccacgaaaaaa |
41408821 |
T |
|
| Q |
119 |
ntggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgagacttttaactatgtcatttcgagccaagtttcaaacct |
218 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| |||| |||| |
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| T |
41408820 |
ctggcacggacactgcattgaaactgtcagtgttgagcaacctgtccggtgctacttctgctgcttctaactatgtcatttcgagccaaatttcggacct |
41408721 |
T |
|
| Q |
219 |
ccttccattcagcttgcagcaaaaatactaaattcagaatctgacatgcatttgannnnnnnctggcttcaaatcctctcatttctgtttttcaaaaatc |
318 |
Q |
| |
|
||||||||||||||||||| ||||| | ||||||||||||||| ||||||| | |||||| ||||||| |||||||| |||| | ||| || |
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|
| T |
41408720 |
ccttccattcagcttgcag-aaaaaaaaacaattcagaatctgacttgcattt-aatattttctggctccaaatccattcatttctattttgccaaattc |
41408623 |
T |
|
| Q |
319 |
catatatcaccatcatcacactactaacaattgcttctgat |
359 |
Q |
| |
|
| |||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
41408622 |
cccatatcatcatcaacactctactaacaattgcttctgat |
41408582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 304 - 359
Target Start/End: Complemental strand, 41200779 - 41200724
Alignment:
| Q |
304 |
tgtttttcaaaaatccatatatcaccatcatcacactactaacaattgcttctgat |
359 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |
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|
| T |
41200779 |
tgtttttcaaaaatccctatatcaccatcagcactctactaacaattgcttctgat |
41200724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 8693 - 8948
Alignment:
| Q |
19 |
ccaattcagaccatgaccaacctgtaagagatctaacaaattcaccttcccttccactgatgcaacaaccaaatcctgttcgctcctgcccatgnnnnnn |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| |
|
|
| T |
8693 |
ccaattcagaccatgaccaacctgtaagagatctaacaaattcaccttcccttccacagatgtaacaaccaaatcttgttcgctcctgcccatgaaaaaa |
8792 |
T |
|
| Q |
119 |
n-tggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgagacttttaactatgtcatttcgagccaagtttcaaacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8793 |
actggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgagacttttaactatgtcatttcgagccaagtttcaaacc |
8892 |
T |
|
| Q |
218 |
tccttccattcagcttgcagcaaaaatactaaattcagaatctgacatgcatttga |
273 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8893 |
tccttacattcagcttgcagcaaaaatactaaattcagaatctgacatgcaattga |
8948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 2048 - 2381
Alignment:
| Q |
19 |
ccaattcagaccatgaccaacctgtaagagatctaacaaattcaccttcccttccactgatgcaacaaccaaatcctgttcgctcctgcccatgnnnnnn |
118 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||| | |
|
|
| T |
2048 |
ccaattcagaccatgaccagtctgtaagggatctaacaaatttgccttcccttccacggatgcaacagccaaatcctgtcgactcctgcccacgaaaaaa |
2147 |
T |
|
| Q |
119 |
ntggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgagacttttaactatgtcatttcgagccaagtttcaaacct |
218 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| |||| |
|
|
| T |
2148 |
ctggcacggacactgcattggaattgtcagtgttgagcaacctgtccgctgctacttctgctgcttctaactatgtcatttcgagccaaatttcggacct |
2247 |
T |
|
| Q |
219 |
ccttccattcagcttgcagcaaaaatactaaattcagaatctgacatgcatttgannnnnnnctggcttcaaatcctctcatttctgtttttcaaaaatc |
318 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||||||||||| ||||||| | |||||| ||||||| ||||||||||||| | ||| || |
|
|
| T |
2248 |
ccttccattcagcttgcagaaaaaacac--aattcagaatctgacttgcattt-aatattttctggctccaaatccattcatttctgttttgccaaattc |
2344 |
T |
|
| Q |
319 |
catatatcaccatcatcacactactaacaattgcttc |
355 |
Q |
| |
|
| |||||| ||||| ||| || |||||||||||||| |
|
|
| T |
2345 |
cccatatcatcatcaacactctgctaacaattgcttc |
2381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 22535 - 22873
Alignment:
| Q |
19 |
ccaattcagaccatgaccaacctgtaagagatctaacaaattcaccttcccttccactgatgcaacaaccaaatcctgttcgctcctgcccatgnnnnnn |
118 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||| ||||||||| ||||||| ||| |||||||||| | |
|
|
| T |
22535 |
ccaattcagaccatgaccagtctgtaagggatctgacaaatttgccttcccttccacggatgcaacagccaaatcatgtcgactcctgcccacgaaaaaa |
22634 |
T |
|
| Q |
119 |
ntggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttctgagacttttaactatgtcatttcgagccaagtttcaaacct |
218 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| |||| |||| |
|
|
| T |
22635 |
ctggcacggacactgcattgaaactgtcagtgttgagcaacctgtccggtgctacttctgctgcttctaactatgtcatttcgagccaaatttcggacct |
22734 |
T |
|
| Q |
219 |
ccttccattcagcttgcagcaaaaatactaaattcagaatctgacatgcatttgannnnnnnctggcttcaaatcctctcatttctgtttttcaaaaatc |
318 |
Q |
| |
|
||||||||||||||||||| ||||| | ||||||||||||||| ||||||| | |||||| ||||||| |||||||| |||| | ||| || |
|
|
| T |
22735 |
ccttccattcagcttgcag-aaaaaaaaacaattcagaatctgacttgcattt-aatattttctggctccaaatccattcatttctattttgccaaattc |
22832 |
T |
|
| Q |
319 |
catatatcaccatcatcacactactaacaattgcttctgat |
359 |
Q |
| |
|
| |||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
22833 |
cccatatcatcatcaacactctactaacaattgcttctgat |
22873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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