View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20735_low_3 (Length: 297)
Name: NF20735_low_3
Description: NF20735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20735_low_3 |
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| [»] scaffold0640 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 2 - 285
Target Start/End: Complemental strand, 1042399 - 1042116
Alignment:
| Q |
2 |
tgagcacagacatgcaggagaactgctcccaccgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacac |
101 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1042399 |
tgagcacagacatccaggagaactgctcccaccgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacac |
1042300 |
T |
|
| Q |
102 |
tggtttgactttcaaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1042299 |
tggtttgactttcaaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagc |
1042200 |
T |
|
| Q |
202 |
atcttattctattattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgctttcaccagtttttcttattc |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1042199 |
atcttattctattattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattc |
1042116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 2 - 285
Target Start/End: Complemental strand, 41193464 - 41193181
Alignment:
| Q |
2 |
tgagcacagacatgcaggagaactgctcccaccgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacac |
101 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
41193464 |
tgagcacagacatccaggagaactgctcccaccgtatgaaaccgagatattcgcggttgaagggttgaaatcaaacctgcaccaatccaacaatcaacac |
41193365 |
T |
|
| Q |
102 |
tggtttgactttcaaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41193364 |
tggtttgactttcaaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagc |
41193265 |
T |
|
| Q |
202 |
atcttattctattattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgctttcaccagtttttcttattc |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41193264 |
atcttattctattattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattc |
41193181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 2 - 285
Target Start/End: Complemental strand, 41200720 - 41200437
Alignment:
| Q |
2 |
tgagcacagacatgcaggagaactgctcccaccgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacac |
101 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
41200720 |
tgagcacagacatccaggagaactgctcccaccgtatgaaaccgagatattcgcggttgaagggttgaaatcaaacctgcaccaatccaacaatcaacac |
41200621 |
T |
|
| Q |
102 |
tggtttgactttcaaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41200620 |
tggtttgactttcaaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagc |
41200521 |
T |
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| Q |
202 |
atcttattctattattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgctttcaccagtttttcttattc |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41200520 |
atcttattctattattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattc |
41200437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 41408552 - 41408355
Alignment:
| Q |
28 |
tcccaccgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacgc |
127 |
Q |
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||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| || |
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| T |
41408552 |
tcccaccatatgaaaccgagacatttgctgttgaagggatgaaatcaaacctgcagtagtccaacaatcaacagcggtttgactttcaaacaaaatatgc |
41408453 |
T |
|
| Q |
128 |
ccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaat |
225 |
Q |
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||||| |||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
41408452 |
ccctcggattcaacagaaaatgcgcaaagctcgcagtttatcggacaggaaaatacattgcaatattgaagagcatcttattgcattattacaacaat |
41408355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 2 - 285
Target Start/End: Complemental strand, 33323990 - 33323707
Alignment:
| Q |
2 |
tgagcacagacatgcaggagaactgctcccaccgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacac |
101 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
33323990 |
tgagcacagacatccaggagaactgctcccaccgtatgaaaccgagatattcgcggttgaagggttgaaatcaaacctgcatcattccaacaatcaacac |
33323891 |
T |
|
| Q |
102 |
tggtttgactttcaaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33323890 |
tggtttgactttcaaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagc |
33323791 |
T |
|
| Q |
202 |
atcttattctattattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgctttcaccagtttttcttattc |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33323790 |
atcttattctattattacaacaatctcgcgaacttcatatctttcctgatttttacaaagcgcttccaccagtttttcttattc |
33323707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 2394 - 2632
Alignment:
| Q |
7 |
acagacatgcaggagaactgctcccaccgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtt |
106 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
2394 |
acagacatccacgagaactgttcccaccgtatgaaatcgagacatt-gatgttgaagggttgaaatcaaacctgcagtagtccaacaatcaacagtggtt |
2492 |
T |
|
| Q |
107 |
tgactttcaaacaaaatacgcccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatctt |
206 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| |
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| T |
2493 |
tgactttcaaacaaaatatgccccttggattcaacagaaaatgcgcaaagctcacagtttatcggacaggaaaatacattgcaattttgaagagcatctt |
2592 |
T |
|
| Q |
207 |
attctattattacaacaatctc-gcgaacttcatatcttt |
245 |
Q |
| |
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||| ||||||||||||||||| | ||||||||||||||| |
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| T |
2593 |
attgcattattacaacaatctcggtgaacttcatatcttt |
2632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 28 - 225
Target Start/End: Original strand, 22903 - 23100
Alignment:
| Q |
28 |
tcccaccgtatgaaaccgagacattcgcggttgaagggttgaaatcaaacctgcagcagtccaacaatcaacactggtttgactttcaaacaaaatacgc |
127 |
Q |
| |
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||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| || |
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| T |
22903 |
tcccaccatatgaaaccgagacatttgctgttgaagggatgaaatcaaacctgcagtagtccaacaatcaacagcggtttgactttcaaacaaaatatgc |
23002 |
T |
|
| Q |
128 |
ccctccgattcaacagaaaatggtcaaagctcacagtttatcggataggaaaatacattgcaatattgaaaagcatcttattctattattacaacaat |
225 |
Q |
| |
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||||| |||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
23003 |
ccctcggattcaacagaaaatgcgcaaagctcgcagtttatcggacaggaaaatacattgcaatattgaagagcatcttattgcattattacaacaat |
23100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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