View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20736_high_1 (Length: 691)

Name: NF20736_high_1
Description: NF20736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20736_high_1
NF20736_high_1
[»] chr4 (8 HSPs)
chr4 (48-578)||(38087752-38088259)
chr4 (611-675)||(38087655-38087719)
chr4 (627-675)||(23870043-23870091)
chr4 (645-675)||(25790459-25790489)
chr4 (627-675)||(7853291-7853339)
chr4 (627-675)||(29118467-29118515)
chr4 (627-675)||(36071642-36071690)
chr4 (627-675)||(55147911-55147959)
[»] chr7 (4 HSPs)
chr7 (426-574)||(41543497-41543643)
chr7 (627-675)||(33480575-33480623)
chr7 (627-675)||(9429421-9429469)
chr7 (627-671)||(35812614-35812658)
[»] chr6 (8 HSPs)
chr6 (426-574)||(7827021-7827167)
chr6 (426-574)||(24909457-24909603)
chr6 (426-574)||(10806326-10806472)
chr6 (627-675)||(12174316-12174364)
chr6 (627-671)||(34969396-34969440)
chr6 (632-675)||(13229303-13229346)
chr6 (645-674)||(33607164-33607193)
chr6 (627-675)||(10668963-10669011)
[»] chr2 (4 HSPs)
chr2 (426-574)||(44612280-44612426)
chr2 (465-578)||(22605451-22605564)
chr2 (627-670)||(33819219-33819262)
chr2 (630-677)||(38561836-38561883)
[»] chr3 (4 HSPs)
chr3 (426-567)||(546926-547065)
chr3 (465-578)||(2507773-2507889)
chr3 (627-675)||(11383587-11383635)
chr3 (627-671)||(52706746-52706790)
[»] chr5 (7 HSPs)
chr5 (426-574)||(40820494-40820640)
chr5 (460-578)||(13392082-13392199)
chr5 (466-578)||(40154346-40154459)
chr5 (190-242)||(14514726-14514778)
chr5 (627-671)||(16570581-16570625)
chr5 (629-675)||(7887274-7887320)
chr5 (629-675)||(12263735-12263781)
[»] scaffold0059 (2 HSPs)
scaffold0059 (460-578)||(6654-6772)
scaffold0059 (484-578)||(632-726)
[»] scaffold0013 (1 HSPs)
scaffold0013 (460-578)||(238628-238746)
[»] chr8 (6 HSPs)
chr8 (627-675)||(26835679-26835727)
chr8 (627-675)||(4350756-4350804)
chr8 (627-675)||(22930317-22930365)
chr8 (627-675)||(28376653-28376701)
chr8 (627-675)||(34142020-34142068)
chr8 (627-675)||(13580443-13580491)
[»] chr1 (1 HSPs)
chr1 (627-675)||(8246805-8246853)
[»] scaffold0531 (1 HSPs)
scaffold0531 (627-673)||(9699-9745)


Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 48 - 578
Target Start/End: Complemental strand, 38088259 - 38087752
Alignment:
Q  48 gtttctttgttttactctccctaacaatgtcataattccacttgttctgaggtttggggctgtttatatactttctaaaaaattgcaccgtaacttagtc 147  Q
    |||||| |||||| |||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  38088259 gtttctctgttttcctctccctaaaaatgacataattccacttgttctgaggtttggggctatttatatactttctgaaaaattgcaccgtaacttagtc 38088160  T
Q  148 acacccaggcttgccgtggtgagcgaagctttcttcatcgaggggtgggtttctgccacatcaacattggagctgtcaaaaccgcctttgctcgccatgg 247  Q
    |||||||||||  |||||||||||||||||||||||| |     |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38088159 acacccaggctcaccgtggtgagcgaagctttcttcacca----gtggatttctgccacatcaacattggagctgtcaaaaccgcctttgctcgccatgg 38088064  T
Q  248 cgacgcccaggctcgctcagccacacacaattttgcaagatttccatgatctctgacttgtttcgttgtgactcaattgtaggctcgctgtggcaagcct 347  Q
    ||||||||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| ||||||| |||||| |||||    
T  38088063 cgacgcccaggatcgcttagccacacacaattttgcaggatttccatgatctatgacttgtttcgttgtgactccattgcaggctcgttgtggcgagcct 38087964  T
Q  348 catggccatggcctcgctgcaaactcgtcgtggccacggtgacatcatctgattttctagcttagccacagattggtggcttagccacgataacaacata 447  Q
    |||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||                   |||||||||||||||     
T  38087963 catggccatggcctcgctgcaggctcgtcgtggccatggtgacatcatctgattttctagcttag-------------------ccacgataacaacatc 38087883  T
Q  448 tgattttcttcactttctttgatctttaaatcccttggcaagcaaattcctacatacttggttggtattagacataaaaagcataaaattccatttatct 547  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38087882 ttattttcttcactttctttgatctttaaatcccttggcaagcaaattcctacatacttggttggtattagacataaaaagcataaaattccatttatct 38087783  T
Q  548 attattttggagcttttcatgagataacttg 578  Q
    |||||||||||||||||||||||||||||||    
T  38087782 attattttggagcttttcatgagataacttg 38087752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 611 - 675
Target Start/End: Complemental strand, 38087719 - 38087655
Alignment:
Q  611 gtatttaactcttatcatatatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  38087719 gtatttaactcttatcatatatctatattgtactaactattaagtaaaaataataattttggtgc 38087655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 675
Target Start/End: Complemental strand, 23870091 - 23870043
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    |||||||||||| |||| ||||| ||| |||||||||||||||||||||    
T  23870091 atatatctatatagtactaactactaagtaaaaataataattttggtgc 23870043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 645 - 675
Target Start/End: Complemental strand, 25790489 - 25790459
Alignment:
Q  645 aactattaaataaaaataataattttggtgc 675  Q
    |||||||||||||||||||||||||||||||    
T  25790489 aactattaaataaaaataataattttggtgc 25790459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 675
Target Start/End: Complemental strand, 7853339 - 7853291
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    |||||||||||| |||| ||||| ||| |||||||||||| ||||||||    
T  7853339 atatatctatatagtactaactactaagtaaaaataataaatttggtgc 7853291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 675
Target Start/End: Complemental strand, 29118515 - 29118467
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    |||||||||| | |||| ||||| || ||||||||||||||||||||||    
T  29118515 atatatctatgtagtactaactactacataaaaataataattttggtgc 29118467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 675
Target Start/End: Original strand, 36071642 - 36071690
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    |||||||||||| |||| |||||| || |||||||||||||||| ||||    
T  36071642 atatatctatatagtactaactatcaagtaaaaataataattttagtgc 36071690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 675
Target Start/End: Original strand, 55147911 - 55147959
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    |||||||||| |||||   |||||||| |||||||||||||||||||||    
T  55147911 atatatctatgttgtagtgactattaagtaaaaataataattttggtgc 55147959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 9e-41; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 426 - 574
Target Start/End: Original strand, 41543497 - 41543643
Alignment:
Q  426 gcttagccacgataacaacatatgattttcttcactttctttgatctttaaatcccttggcaagcaaattcctacatacttggttggtattagacataaa 525  Q
    ||||||||||||| ||||||| | |||||||||||||||||||||||||   || |||||||||||||| |||||||| ||||||||||||| |||||||    
T  41543497 gcttagccacgatgacaacatctaattttcttcactttctttgatctttt--tctcttggcaagcaaatccctacataattggttggtattaaacataaa 41543594  T
Q  526 aagcataaaattccatttatctattattttggagcttttcatgagataa 574  Q
    ||||||||| |   ||| |||||||||||||||||||||||||||||||    
T  41543595 aagcataaagtggtattaatctattattttggagcttttcatgagataa 41543643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 675
Target Start/End: Original strand, 33480575 - 33480623
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    |||||||||| | |||| |||||||| ||||||||||||||||||||||    
T  33480575 atatatctatgtagtactaactattacataaaaataataattttggtgc 33480623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 675
Target Start/End: Original strand, 9429421 - 9429469
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    |||||| |||||  ||| |||||||||||||||||| ||||||||||||    
T  9429421 atatatttatataatactaactattaaataaaaatactaattttggtgc 9429469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 671
Target Start/End: Complemental strand, 35812658 - 35812614
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttg 671  Q
    |||||||||||| |||| || |||||| |||||||||||||||||    
T  35812658 atatatctatatagtactaattattaagtaaaaataataattttg 35812614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 9e-41; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 426 - 574
Target Start/End: Original strand, 7827021 - 7827167
Alignment:
Q  426 gcttagccacgataacaacatatgattttcttcactttctttgatctttaaatcccttggcaagcaaattcctacatacttggttggtattagacataaa 525  Q
    ||||||||||||| ||||||| | |||||||||||||||||||||||||   || |||||||||||||| |||||||| ||||||||||||| |||||||    
T  7827021 gcttagccacgatgacaacatctaattttcttcactttctttgatctttt--tctcttggcaagcaaatccctacataattggttggtattaaacataaa 7827118  T
Q  526 aagcataaaattccatttatctattattttggagcttttcatgagataa 574  Q
    ||||||||| |   ||| |||||||||||||||||||||||||||||||    
T  7827119 aagcataaagtggtattaatctattattttggagcttttcatgagataa 7827167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 426 - 574
Target Start/End: Original strand, 24909457 - 24909603
Alignment:
Q  426 gcttagccacgataacaacatatgattttcttcactttctttgatctttaaatcccttggcaagcaaattcctacatacttggttggtattagacataaa 525  Q
    ||||||||||||| ||||||| | |||||||||||||||||||||||||   || |||||||||||||| |||||||| ||||||||||||| |||||||    
T  24909457 gcttagccacgatgacaacatctaattttcttcactttctttgatctttt--tctcttggcaagcaaatccctacataattggttggtattaaacataaa 24909554  T
Q  526 aagcataaaattccatttatctattattttggagcttttcatgagataa 574  Q
    ||||||||| |   ||| |||||||||||||||||||||||||||||||    
T  24909555 aagcataaagtagtattaatctattattttggagcttttcatgagataa 24909603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 426 - 574
Target Start/End: Complemental strand, 10806472 - 10806326
Alignment:
Q  426 gcttagccacgataacaacatatgattttcttcactttctttgatctttaaatcccttggcaagcaaattcctacatacttggttggtattagacataaa 525  Q
    ||||||||||||| ||||||| | |||||||||||||||||||||||||   ||  |||| |||||||| |||||||| ||||||||||||| |||||||    
T  10806472 gcttagccacgatgacaacatctaattttcttcactttctttgatctttt--tcttttggtaagcaaatccctacataattggttggtattaaacataaa 10806375  T
Q  526 aagcataaaattccatttatctattattttggagcttttcatgagataa 574  Q
    ||||||||| |   | | |||||||||||||||| ||||||||||||||    
T  10806374 aagcataaagtagtactaatctattattttggagattttcatgagataa 10806326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 675
Target Start/End: Complemental strand, 12174364 - 12174316
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    |||||||||||| |||| ||||| ||| |||||||||||||||||||||    
T  12174364 atatatctatatagtactaactactaagtaaaaataataattttggtgc 12174316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 671
Target Start/End: Complemental strand, 34969440 - 34969396
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttg 671  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||    
T  34969440 atatatctatatagtaccaactactaagtaaaaataataattttg 34969396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 675
Target Start/End: Complemental strand, 13229346 - 13229303
Alignment:
Q  632 tctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    ||||||||||||| |||| ||| |||||||||||||||||||||    
T  13229346 tctatattgtaccgactactaagtaaaaataataattttggtgc 13229303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 645 - 674
Target Start/End: Original strand, 33607164 - 33607193
Alignment:
Q  645 aactattaaataaaaataataattttggtg 674  Q
    ||||||||||||||||||||||||||||||    
T  33607164 aactattaaataaaaataataattttggtg 33607193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 675
Target Start/End: Original strand, 10668963 - 10669011
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    ||||||||||||  ||| ||||| ||| |||||||||||||||||||||    
T  10668963 atatatctatataatactaactaataagtaaaaataataattttggtgc 10669011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 9e-41; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 426 - 574
Target Start/End: Original strand, 44612280 - 44612426
Alignment:
Q  426 gcttagccacgataacaacatatgattttcttcactttctttgatctttaaatcccttggcaagcaaattcctacatacttggttggtattagacataaa 525  Q
    ||||||||||||| ||||||| | |||||||||||||||||||||||||   || |||||||||||||| |||||||| ||||||||||||| |||||||    
T  44612280 gcttagccacgatgacaacatctaattttcttcactttctttgatctttt--tctcttggcaagcaaatccctacataattggttggtattaaacataaa 44612377  T
Q  526 aagcataaaattccatttatctattattttggagcttttcatgagataa 574  Q
    ||||||||| |   ||| |||||||||||||||||||||||||||||||    
T  44612378 aagcataaagtggtattaatctattattttggagcttttcatgagataa 44612426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 465 - 578
Target Start/End: Original strand, 22605451 - 22605564
Alignment:
Q  465 tttgatctttaaatcccttggcaagcaaattcctacatacttggttggtattagacataaaaagcataaaattccatttatctattattttggagctttt 564  Q
    |||||||||||| ||||||||| || |||||||||||||  |||||| ||||||||||||| | || ||| |  ||||||||||||||||||||||||||    
T  22605451 tttgatctttaagtcccttggccagtaaattcctacataaatggttgatattagacataaataacaaaaagtagcatttatctattattttggagctttt 22605550  T
Q  565 catgagataacttg 578  Q
    ||| ||||||||||    
T  22605551 cattagataacttg 22605564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 670
Target Start/End: Original strand, 33819219 - 33819262
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataatttt 670  Q
    |||||||||| | ||||||||| |||||||||||||||||||||    
T  33819219 atatatctatgtagtaccaacttttaaataaaaataataatttt 33819262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 630 - 677
Target Start/End: Complemental strand, 38561883 - 38561836
Alignment:
Q  630 tatctatattgtaccaactattaaataaaaataataattttggtgctc 677  Q
    |||||||||||||  ||||| ||||||||||||||||||| |||||||    
T  38561883 tatctatattgtaataactactaaataaaaataataatttcggtgctc 38561836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 6e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 426 - 567
Target Start/End: Original strand, 546926 - 547065
Alignment:
Q  426 gcttagccacgataacaacatatgattttcttcactttctttgatctttaaatcccttggcaagcaaattcctacatacttggttggtattagacataaa 525  Q
    ||||||||||||| ||| ||| | |||||||||||||||||||||||||   || |||||||||||||| |||||||| |||||||||||||||||||||    
T  546926 gcttagccacgatgacagcatctaattttcttcactttctttgatctttt--tctcttggcaagcaaatccctacataattggttggtattagacataaa 547023  T
Q  526 aagcataaaattccatttatctattattttggagcttttcat 567  Q
    ||||||||| |   ||||||||||||||||||||||||||||    
T  547024 aagcataaagtagtatttatctattattttggagcttttcat 547065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 465 - 578
Target Start/End: Complemental strand, 2507889 - 2507773
Alignment:
Q  465 tttgatctttaaatcccttggcaa-gcaaattcctacatacttggttggtattagacata-aaaagcataaaattccatttatc-tattattttggagct 561  Q
    |||||||||||| ||||||||||| | |||||||||||||  ||||| |||||||||||| |||| |||||| |  |||||| | | || ||||||||||    
T  2507889 tttgatctttaagtcccttggcaaagtaaattcctacataaatggtttgtattagacataaaaaaacataaagtagcatttaccttttttttttggagct 2507790  T
Q  562 tttcatgagataacttg 578  Q
    ||| |||||||||||||    
T  2507789 tttgatgagataacttg 2507773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 675
Target Start/End: Complemental strand, 11383635 - 11383587
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    |||||| |||||  ||| ||||| |||||||||||||||||||||||||    
T  11383635 atatatatatatattactaactactaaataaaaataataattttggtgc 11383587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 671
Target Start/End: Original strand, 52706746 - 52706790
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttg 671  Q
    ||||||||||||||||   |||| |||||||||||||||||||||    
T  52706746 atatatctatattgtaaagactactaaataaaaataataattttg 52706790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 6e-36; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 426 - 574
Target Start/End: Complemental strand, 40820640 - 40820494
Alignment:
Q  426 gcttagccacgataacaacatatgattttcttcactttctttgatctttaaatcccttggcaagcaaattcctacatacttggttggtattagacataaa 525  Q
    ||||||||| ||| ||||||| | |||||||||||||||||||||||||   ||  ||||||||||||| |||||||| ||||||||||||| |||||||    
T  40820640 gcttagccaagatgacaacatctaattttcttcactttctttgatctttt--tctattggcaagcaaatccctacataattggttggtattaaacataaa 40820543  T
Q  526 aagcataaaattccatttatctattattttggagcttttcatgagataa 574  Q
    ||||||||| |   ||| |||||||||||||||||||||||||||||||    
T  40820542 aagcataaagtagtattaatctattattttggagcttttcatgagataa 40820494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 460 - 578
Target Start/End: Original strand, 13392082 - 13392199
Alignment:
Q  460 ctttctttgatctttaaatcccttggcaagcaaattcctacatacttggttggtattagacataaaaagcataaaattccatttatctattattttggag 559  Q
    ||||||||| ||||||||| ||||||||||||| |||||||| |   ||||||||| ||| |||||||||||||||||  | ||||  | |||||| |||    
T  13392082 ctttctttgctctttaaatgccttggcaagcaatttcctacacaaaaggttggtataagatataaaaagcataaaattgaaattattcaatatttt-gag 13392180  T
Q  560 cttttcatgagataacttg 578  Q
    |||||||||||||| ||||    
T  13392181 cttttcatgagatatcttg 13392199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 466 - 578
Target Start/End: Original strand, 40154346 - 40154459
Alignment:
Q  466 ttgatctttaaatcccttggcaagcaaattcctacatacttggttggtattagacataaaaag-cataaaattccatttatctattattttggagctttt 564  Q
    ||||||||||| ||  ||| |||| |||||||||||||  | ||||||||||||||||||||  || |||     |||| ||||||||||||||||||||    
T  40154346 ttgatctttaagtctattgacaagtaaattcctacataaatagttggtattagacataaaaaaacacaaatgagtatttctctattattttggagctttt 40154445  T
Q  565 catgagataacttg 578  Q
    ||||||||||||||    
T  40154446 catgagataacttg 40154459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 14514778 - 14514726
Alignment:
Q  190 gggtgggtttctgccacatcaacattggagctgtcaaaaccgcctttgctcgc 242  Q
    |||||||||||||||||| || || || |||||||||||||||||| ||||||    
T  14514778 gggtgggtttctgccacaccagcactgaagctgtcaaaaccgccttagctcgc 14514726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 671
Target Start/End: Original strand, 16570581 - 16570625
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttg 671  Q
    |||||||||||| |||||||||| ||| |||||||||||||||||    
T  16570581 atatatctatatggtaccaactaataagtaaaaataataattttg 16570625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 629 - 675
Target Start/End: Original strand, 7887274 - 7887320
Alignment:
Q  629 atatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    |||||||||| |||| ||||| ||| |||||||||||||||||||||    
T  7887274 atatctatatagtactaactactaagtaaaaataataattttggtgc 7887320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 629 - 675
Target Start/End: Original strand, 12263735 - 12263781
Alignment:
Q  629 atatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    |||||||||| |||| ||| ||||| |||||||||||||||||||||    
T  12263735 atatctatatagtactaaccattaagtaaaaataataattttggtgc 12263781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 460 - 578
Target Start/End: Original strand, 6654 - 6772
Alignment:
Q  460 ctttctttgatctttaaatcccttggcaagcaaattcctacatacttggttggtattagacataaaaagcataaaattccatttatctattattttggag 559  Q
    |||||| ||||| |||| |||||||||||| ||||| || ||||  ||||||||||||| ||||||| ||||||| |  |||| |||||||| |||| ||    
T  6654 ctttctatgatcattaagtcccttggcaagtaaatttcttcataaatggttggtattagtcataaaaggcataaagtagcattgatctattaatttgaag 6753  T
Q  560 cttttcatgagataacttg 578  Q
     ||||||||||||||||||    
T  6754 tttttcatgagataacttg 6772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 632 - 726
Alignment:
Q  484 ggcaagcaaattcctacatacttggttggtattagacataaaaagcataaaattccatttatctattattttggagcttttcatgagataacttg 578  Q
    |||||| ||||| || ||||  ||| ||||||||||||||||| ||||||| |  ||||||||||||| |||| || ||||||||||||||||||    
T  632 ggcaagtaaatttcttcataaatggctggtattagacataaaaggcataaagtagcatttatctattaatttgaagtttttcatgagataacttg 726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 460 - 578
Target Start/End: Complemental strand, 238746 - 238628
Alignment:
Q  460 ctttctttgatctttaaatcccttggcaagcaaattcctacatacttggttggtattagacataaaaagcataaaattccatttatctattattttggag 559  Q
    |||||| ||||| |||| |||||||||||| ||||| || ||||  ||||||||||||| ||||||| ||||||| |  |||| |||||||| |||| ||    
T  238746 ctttctatgatcattaagtcccttggcaagtaaatttcttcataaatggttggtattagtcataaaaggcataaagtagcattgatctattaatttgaag 238647  T
Q  560 cttttcatgagataacttg 578  Q
     ||||||||||||||||||    
T  238646 tttttcatgagataacttg 238628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 675
Target Start/End: Original strand, 26835679 - 26835727
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    |||||| |||||||||| ||||||||| |||||||||||||||||||||    
T  26835679 atatatttatattgtactaactattaagtaaaaataataattttggtgc 26835727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 675
Target Start/End: Original strand, 4350756 - 4350804
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    ||||||||||||  ||| ||||| |||||||||||||||||||||||||    
T  4350756 atatatctatataatactaactactaaataaaaataataattttggtgc 4350804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 675
Target Start/End: Complemental strand, 22930365 - 22930317
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    |||||||||||| |||| ||||||||| ||||||| |||||||||||||    
T  22930365 atatatctatatagtactaactattaagtaaaaattataattttggtgc 22930317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 675
Target Start/End: Complemental strand, 28376701 - 28376653
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    |||||||||||| |||| ||||| ||| |||||||||||||||||||||    
T  28376701 atatatctatatagtactaactactaagtaaaaataataattttggtgc 28376653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 675
Target Start/End: Complemental strand, 34142068 - 34142020
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    |||||||||||| |||| ||||| ||||||||||||||| |||||||||    
T  34142068 atatatctatatagtactaactactaaataaaaataatagttttggtgc 34142020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 675
Target Start/End: Original strand, 13580443 - 13580491
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    |||||| |||||  ||| ||||||||| |||||||||||||||||||||    
T  13580443 atatatttatataatactaactattaagtaaaaataataattttggtgc 13580491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 675
Target Start/End: Original strand, 8246805 - 8246853
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttggtgc 675  Q
    |||||||||||| |||| ||||||||| |||||||||||||||||||||    
T  8246805 atatatctatatagtactaactattaagtaaaaataataattttggtgc 8246853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 627 - 673
Target Start/End: Complemental strand, 9745 - 9699
Alignment:
Q  627 atatatctatattgtaccaactattaaataaaaataataattttggt 673  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||    
T  9745 atatatctatatagtactaactactaaataaaaataataattttggt 9699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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