View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20736_high_15 (Length: 329)
Name: NF20736_high_15
Description: NF20736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20736_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 68 - 306
Target Start/End: Complemental strand, 38749061 - 38748823
Alignment:
| Q |
68 |
tgcaatgtatcaaagtacattgcatggacacctctttgtgtattctatacataaaattctatatatcgtgatctagaattttcatgtcacccaaaaccaa |
167 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38749061 |
tgcaatgtatcaaagtacatttcatggacacctctttgtgtattctatacataaaattctatatatcgtgatctagaattttcatgtcacccaaaaccaa |
38748962 |
T |
|
| Q |
168 |
aaaggcacggatattgttgaattgagagcttgtaatcgaattacacatagccaaaacattaggccccaatgaattaacaaactgccacataccctctttt |
267 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38748961 |
aagggcacggatattgttgaattgagagcttgtaatcgaattacacatagccaaaacattaggtcccaatgaattaacaaactgccacataccctctttt |
38748862 |
T |
|
| Q |
268 |
gcatgttactctcaaatgctacctagccacatacccccc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38748861 |
gcatgttactctcaaatgctacctagccacatacccccc |
38748823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University