View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20736_high_21 (Length: 266)
Name: NF20736_high_21
Description: NF20736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20736_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 31831225 - 31830989
Alignment:
| Q |
12 |
aagaaagaataaatattgatgcatttcatcaatagaaagtcaaatcggtatagttgtagccatttgaatgaggcaacaactcttctacttcgacccttga |
111 |
Q |
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| T |
31831225 |
aagaaagaataaatattgatgcatttcatcaatagaaagtcaaatcggtatagttgtagccatttgaatgaggcaacaactcttctacttcgacccttga |
31831126 |
T |
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| Q |
112 |
acttgagcaactagagcattttttgattcggttacggctaacagactcgacttctgccaggaacacgctgcaaactggtctatgatcagagaatcttgac |
211 |
Q |
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| T |
31831125 |
acttgagcaactagagcattttttgattcggttacggctaacagactcgacttctgccaggaacacgctgcaaactggtctatgatcagagaatcttgac |
31831026 |
T |
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| Q |
212 |
tcgccacgaacataagataattggcggaggcctcttc |
248 |
Q |
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| T |
31831025 |
tcgccacgaacataagataattggcggaggcctcttc |
31830989 |
T |
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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 234
Target Start/End: Original strand, 38121295 - 38121466
Alignment:
| Q |
63 |
agttgtagccatttgaatgaggcaacaactcttctacttcgacccttgaacttgagcaactagagcattttttgattcggttacggctaacagactcgac |
162 |
Q |
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| T |
38121295 |
agttgtaaccgtgtgaatgtggcaataactcttctatttcaatcctggaactggagcaagtagaacctttctttatttggttactgttaatagactcaac |
38121394 |
T |
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| Q |
163 |
ttctgccaggaacacgctgcaaactggtctatgatcagagaatcttgactcgccacgaacataagataattg |
234 |
Q |
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| T |
38121395 |
ttctgccaagaatatgctacaaaccggtctatgatcagagaatcttgactcgccgcgaacataagataattg |
38121466 |
T |
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