View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20736_high_31 (Length: 227)

Name: NF20736_high_31
Description: NF20736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20736_high_31
NF20736_high_31
[»] chr4 (15 HSPs)
chr4 (3-139)||(38088435-38088571)
chr4 (139-211)||(12473699-12473771)
chr4 (139-211)||(12528108-12528180)
chr4 (139-211)||(55590477-55590549)
chr4 (138-211)||(33249478-33249551)
chr4 (142-211)||(35869675-35869744)
chr4 (145-211)||(52910153-52910219)
chr4 (139-211)||(21260789-21260861)
chr4 (144-211)||(52012778-52012845)
chr4 (138-211)||(34829187-34829260)
chr4 (141-199)||(22343334-22343392)
chr4 (139-211)||(51811909-51811981)
chr4 (144-203)||(28092855-28092914)
chr4 (144-203)||(54277634-54277693)
chr4 (145-211)||(49999692-49999758)
[»] chr3 (17 HSPs)
chr3 (139-210)||(10179868-10179939)
chr3 (139-210)||(10018671-10018742)
chr3 (138-207)||(32319473-32319542)
chr3 (139-211)||(50934495-50934567)
chr3 (138-211)||(47426344-47426417)
chr3 (139-211)||(44380249-44380321)
chr3 (139-210)||(10123211-10123282)
chr3 (148-211)||(33509684-33509747)
chr3 (142-211)||(37742726-37742792)
chr3 (144-211)||(47186175-47186242)
chr3 (146-206)||(39498778-39498838)
chr3 (144-211)||(31187174-31187241)
chr3 (144-203)||(34029403-34029462)
chr3 (144-203)||(42273334-42273393)
chr3 (144-211)||(42664673-42664740)
chr3 (144-203)||(46489767-46489826)
chr3 (139-211)||(17466268-17466340)
[»] chr2 (6 HSPs)
chr2 (139-211)||(34392185-34392257)
chr2 (139-211)||(7381687-7381759)
chr2 (139-211)||(21603954-21604026)
chr2 (139-211)||(37358025-37358097)
chr2 (50-95)||(33730608-33730653)
chr2 (158-211)||(23863907-23863958)
[»] chr5 (12 HSPs)
chr5 (141-211)||(19357365-19357435)
chr5 (139-211)||(1826254-1826326)
chr5 (139-211)||(9827783-9827855)
chr5 (139-211)||(11607638-11607710)
chr5 (138-211)||(39570147-39570220)
chr5 (144-211)||(38010718-38010785)
chr5 (149-211)||(33858642-33858704)
chr5 (139-211)||(13015376-13015448)
chr5 (144-211)||(13086753-13086820)
chr5 (144-211)||(29989962-29990029)
chr5 (144-203)||(35622816-35622875)
chr5 (144-209)||(13478151-13478216)
[»] chr7 (6 HSPs)
chr7 (138-211)||(35341530-35341603)
chr7 (138-211)||(48250148-48250221)
chr7 (138-208)||(40856386-40856456)
chr7 (139-192)||(40893165-40893218)
chr7 (140-203)||(48072385-48072446)
chr7 (63-99)||(31823498-31823534)
[»] chr1 (8 HSPs)
chr1 (139-206)||(29119433-29119500)
chr1 (139-211)||(32676131-32676203)
chr1 (144-211)||(2569037-2569104)
chr1 (141-206)||(7214520-7214585)
chr1 (138-211)||(8462123-8462195)
chr1 (138-211)||(25161303-25161376)
chr1 (139-197)||(46435571-46435629)
chr1 (144-211)||(8809744-8809811)
[»] chr8 (6 HSPs)
chr8 (138-208)||(41179670-41179740)
chr8 (138-211)||(24337934-24338007)
chr8 (151-211)||(18168392-18168452)
chr8 (151-211)||(18631949-18632009)
chr8 (144-211)||(1514803-1514870)
chr8 (44-96)||(16243170-16243221)
[»] chr6 (5 HSPs)
chr6 (138-211)||(5403980-5404053)
chr6 (144-209)||(11753167-11753232)
chr6 (139-205)||(1211954-1212020)
chr6 (144-211)||(34245567-34245634)
chr6 (139-207)||(32644944-32645012)
[»] scaffold0032 (1 HSPs)
scaffold0032 (139-211)||(34189-34261)
[»] scaffold0229 (1 HSPs)
scaffold0229 (139-205)||(13116-13182)
[»] scaffold0041 (1 HSPs)
scaffold0041 (139-192)||(73066-73119)
[»] scaffold0263 (1 HSPs)
scaffold0263 (145-192)||(23094-23141)


Alignment Details
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 38088435 - 38088571
Alignment:
Q  3 gggtgtttgtgcacatagttgtcgttgtcgttttacgtatcttgatattttt-gggtgttaaaagagcaatttttaaagttagaagagcaatttcccact 101  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| |||    
T  38088435 gggtgtttgtgcacatagttgtcgttgtcgttttaagtatcttgatatttttggggtgtt-aaagaccaatttttaaagttagaagagcaatttccaact 38088533  T
Q  102 actaaaacctttatttctctatttcggtgcctaaacgg 139  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  38088534 actaaaacccttatttctctatttcggtgcctaaacgg 38088571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 12473699 - 12473771
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||    
T  12473699 ggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaat 12473771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 12528108 - 12528180
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||    
T  12528108 ggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaat 12528180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 55590477 - 55590549
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||| |||||||||||    
T  55590477 ggattccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaat 55590549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 33249551 - 33249478
Alignment:
Q  138 gggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||| |||||||||||||||||||||| |||||||||||| ||||| |||||| |||||| |||||||||||    
T  33249551 gggatttcacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaat 33249478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 35869744 - 35869675
Alignment:
Q  142 ttccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||||||||||||||||||||||| |||||||||||||||||  |||||| | ||||||||||||||||    
T  35869744 ttccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaat 35869675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 52910219 - 52910153
Alignment:
Q  145 cacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||||||||| | ||||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaat 52910153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 21260789 - 21260861
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||||||||| | |||||||||||||| |||| |||||| |||||| |||||| |||||| |||||||||||    
T  21260789 ggattccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaat 21260861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 52012778 - 52012845
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||||||||||||||||||||| |||| |||||| |||||  |||| |||||||||||| |||||||    
T  52012778 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaat 52012845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 34829260 - 34829187
Alignment:
Q  138 gggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||| ||||| ||||| |||||||||| |||| |||||| || ||| ||||||||||||| |||||||||||    
T  34829260 gggatttcacttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaat 34829187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 22343334 - 22343392
Alignment:
Q  141 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtg 199  Q
    |||||||||||||||||||||||||  ||||||||||| |||||  |||||| ||||||    
T  22343334 attccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtg 22343392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 51811909 - 51811981
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||||| ||||||||||||||||  || | ||||||  ||||| |||||| ||| ||||||||||||||    
T  51811909 ggattccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaat 51811981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 28092914 - 28092855
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccac 203  Q
    ||||||||||||||||  | ||| |||| |||||| ||||||||||| ||||||||||||    
T  28092914 ccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccac 28092855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 54277693 - 54277634
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccac 203  Q
    ||||||||||||||||  | ||| |||| |||||| ||||||||||| ||||||||||||    
T  54277693 ccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccac 54277634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 49999758 - 49999692
Alignment:
Q  145 cacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||||||||| ||| |||||||| ||| |  ||||||||||||| |||||| ||| |||||||    
T  49999758 cacttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaat 49999692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 10179939 - 10179868
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaa 210  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||    
T  10179939 ggattccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 10018742 - 10018671
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaa 210  Q
    ||||||||||||||||||||||| |||| |||| |||||||||||||||||| |||||||||||||||||||    
T  10018742 ggattccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 32319542 - 32319473
Alignment:
Q  138 gggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctac 207  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  32319542 gggattctacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctac 32319473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 50934495 - 50934567
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| |||||||    
T  50934495 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaat 50934567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 47426344 - 47426417
Alignment:
Q  138 gggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||||| |||||| |||||| |||||| ||||    
T  47426344 gggataccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaat 47426417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 44380249 - 44380321
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||  |||||| |||||| |||||| ||||    
T  44380249 ggattccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaat 44380321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 10123282 - 10123211
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaa 210  Q
    ||||||||||||||||||||||| |||  |||| |||||| || |||||||| |||||||||||||||||||    
T  10123282 ggattccacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctaccaa 10123211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 33509684 - 33509747
Alignment:
Q  148 ttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||||||||||||||||||||| ||||||| |||||  |||||| ||||||||||||||||||    
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaat 33509747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 37742726 - 37742792
Alignment:
Q  142 ttccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||||||||   ||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||    
T  37742726 ttccacttgtgta---ttaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaat 37742792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 47186175 - 47186242
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||||||||||||||||||||| |||| |||||| |||||| |||| | |||||||||| |||||||    
T  47186175 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaat 47186242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 39498838 - 39498778
Alignment:
Q  146 acttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccaccta 206  Q
    |||||||||||||||| |||| |||| ||||||  ||||||||||||||||||| ||||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcaccta 39498778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 31187241 - 31187174
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||| |||||||||||||||| |||| |||||| |||||  |||| | |||||||||| |||||||    
T  31187241 ccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaat 31187174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 34029462 - 34029403
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccac 203  Q
    |||||||| |||||||||||||| |||| |||||| ||||| ||||| | ||||||||||    
T  34029462 ccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccac 34029403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 42273334 - 42273393
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccac 203  Q
    ||||||||||||||||  | ||| |||| |||||| ||||||||||| ||||||||||||    
T  42273334 ccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccac 42273393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 42664673 - 42664740
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||||||||||||||||||||| || | |||||| |||||  |||| | |||||||||| |||||||    
T  42664673 ccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaat 42664740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 46489826 - 46489767
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccac 203  Q
    ||||||||||||||||  | ||| |||| |||||| ||||||||||| ||||||||||||    
T  46489826 ccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccac 46489767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 17466268 - 17466340
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||| |||||||| ||| |  ||  ||||||||||| ||||||||||||| |||||| |||||| ||||    
T  17466268 ggattccatttgtgtacgattcaaatatcaatggtatatatcattggtcaattagagtgtgtcacctatcaat 17466340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 34392257 - 34392185
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||| |||||| ||||||||||||||||||    
T  34392257 ggattccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaat 34392185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 7381687 - 7381759
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||||| |||||||||||||||||||| |||||||||||| ||||| |||||| ||||||||| ||||||||    
T  7381687 ggattccgcttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaat 7381759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 21603954 - 21604026
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||||||||||||||||||||||| |||||||||||||||||  |||||| |||||  |||||||||||    
T  21603954 ggattccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaat 21604026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 37358097 - 37358025
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||||   ||||| |||||| |||||| ||||    
T  37358097 ggattccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaat 37358025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 33730653 - 33730608
Alignment:
Q  50 tttttgggtgttaaaagagcaatttttaaagttagaagagcaattt 95  Q
    |||| |||||||||||||||||||||  ||||||||||||||||||    
T  33730653 ttttagggtgttaaaagagcaattttcgaagttagaagagcaattt 33730608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 23863958 - 23863907
Alignment:
Q  158 ttaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||||||| ||||||||||   |||||||||||| ||||||||||||||||||    
T  23863958 ttaaggtaccaatggtatatt--attggtcaattagagtgtgccacctaccaat 23863907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 19357435 - 19357365
Alignment:
Q  141 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||||||||||    
T  19357435 attccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaat 19357365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 1826254 - 1826326
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||| |||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||    
T  1826254 ggataccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaat 1826326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 9827783 - 9827855
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||||||||||||||||||||||| ||||||||||||| || |||||||| ||||| ||||||||||||    
T  9827783 ggattccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaat 9827855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 11607710 - 11607638
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||  |||||| ||||||||||||||||||    
T  11607710 ggattccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaat 11607638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 39570220 - 39570147
Alignment:
Q  138 gggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||||||||||||||| |||||| |||  |||||||||||||||||| |||||| |||||| |||||||||||    
T  39570220 gggattccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaat 39570147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 38010785 - 38010718
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||||||||||||||||||||| |||| |||||| |||||| |||| | |||||||||| |||||||    
T  38010785 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaat 38010718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 33858704 - 33858642
Alignment:
Q  149 tgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||||||||||||| ||| ||||||| |||||  |||||| ||||||||||||||||||    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaat 33858642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 13015376 - 13015448
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||| ||||||||||||||||||||||| |||| |||||| |||||  |||| | |||||||||| |||||||    
T  13015376 ggataccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaat 13015448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 13086753 - 13086820
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||||||||||||||||||||| |||| |||||| |||||  |||| | |||||||||| |||||||    
T  13086753 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaat 13086820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 29989962 - 29990029
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||||||||||||||||||||  |||| |||||| |||||  |||| | |||||||||| |||||||    
T  29989962 ccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaat 29990029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 35622816 - 35622875
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccac 203  Q
    ||||||||||||||||  | ||| |||| |||||| ||||||||||| ||||||||||||    
T  35622816 ccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccac 35622875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 13478216 - 13478151
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctacca 209  Q
    |||||||||||||||||||| || |||| |||||| |||||  |||| | |||||||||| |||||    
T  13478216 ccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacatacca 13478151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 35341530 - 35341603
Alignment:
Q  138 gggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||  |||||| ||||||||||||||||||    
T  35341530 gggattccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaat 35341603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 48250148 - 48250221
Alignment:
Q  138 gggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||| ||||||||||||||||||||||| |||| |||||| ||||||||||||| ||||||||||||||||||    
T  48250148 gggataccacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaat 48250221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 208
Target Start/End: Original strand, 40856386 - 40856456
Alignment:
Q  138 gggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctacc 208  Q
    ||||| |||||| |||| |||||||||||||||| ||||||  |||| ||||||| |||||| ||||||||    
T  40856386 gggataccacttatgtatcattaaggtactaatgatatatattattgatcaattagagtgtgtcacctacc 40856456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 40893218 - 40893165
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaatta 192  Q
    |||| |||||||| |||||| || ||| ||||||||||||||||||||||||||    
T  40893218 ggataccacttgtataccatcaaagtattaatggtatataccattggtcaatta 40893165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 48072385 - 48072446
Alignment:
Q  140 gattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccac 203  Q
    |||||||||||||||| |||||||||| ||| |  |||||||||| ||||||| ||||||||||    
T  48072385 gattccacttgtgtactattaaggtaccaatag--tataccattgatcaattagagtgtgccac 48072446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 31823498 - 31823534
Alignment:
Q  63 aaagagcaatttttaaagttagaagagcaatttccca 99  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  31823498 aaagagcaatttttgaagttagaatagcaatttccca 31823534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 29119500 - 29119433
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccaccta 206  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  29119500 ggataccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccaccta 29119433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 32676131 - 32676203
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||| | ||  ||||||||||||    
T  32676131 ggattccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaat 32676203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 2569037 - 2569104
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||||||||||||||||||||| ||||||||||| |||| | |||||| ||||||||||||||||||    
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaat 2569104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 7214585 - 7214520
Alignment:
Q  141 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccaccta 206  Q
    |||||| ||||||||||||||||||||||| |||||||  |||||||||||| |||||| ||||||    
T  7214585 attccatttgtgtaccattaaggtactaatagtatatattattggtcaattagagtgtgtcaccta 7214520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 8462123 - 8462195
Alignment:
Q  138 gggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||||||||||||  ||||| |||| ||||||||||| ||||| ||||||| ||||||||||||||||||    
T  8462123 gggattccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaat 8462195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 25161303 - 25161376
Alignment:
Q  138 gggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||||||||||||||||||| ||   |||||||||||||||||  |||||| ||||||||||||| ||||    
T  25161303 gggattccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaat 25161376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 46435629 - 46435571
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtg 197  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||||| |||||| ||||    
T  46435629 ggataccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtg 46435571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 8809811 - 8809744
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||||||||||||||||||||| |||| |||||| |||||  |||| | |||||||||| |||||||    
T  8809811 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaat 8809744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 41179740 - 41179670
Alignment:
Q  138 gggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctacc 208  Q
    ||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||||||||| ||||||||    
T  41179740 gggattccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctacc 41179670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 24338007 - 24337934
Alignment:
Q  138 gggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||| |||||||||||| |||||||||  ||||||||||||||| ||||||||| ||||||||| ||||||||    
T  24338007 gggataccacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaat 24337934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 18168392 - 18168452
Alignment:
Q  151 tgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||||||||||| ||||||||||| ||||| ||||||| ||||| ||||||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaat 18168452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 18631949 - 18632009
Alignment:
Q  151 tgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||||||||||| ||||||||||| ||||| ||||||| ||||| ||||||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaat 18632009  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 1514803 - 1514870
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||||||||||||||||||||| |||| |||||| ||||| ||||| | ||||| |||| |||||||    
T  1514803 ccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaat 1514870  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 16243221 - 16243170
Alignment:
Q  44 ttgatatttttgggtgttaaaagagcaatttttaaagttagaagagcaatttc 96  Q
    |||||||||||||||||||||| | |||||||  |||||| ||||||||||||    
T  16243221 ttgatatttttgggtgttaaaa-aacaattttcgaagttaaaagagcaatttc 16243170  T

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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 5404053 - 5403980
Alignment:
Q  138 gggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    ||||| |||||||||||||||||||||||||||||||||||  |||||||| ||| ||| ||||||||||||||    
T  5404053 gggataccacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaat 5403980  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 11753167 - 11753232
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctacca 209  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||| ||||| ||||||||||    
T  11753167 ccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacca 11753232  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 1212020 - 1211954
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacct 205  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||  |||||  |||||||||||    
T  1212020 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacct 1211954  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 34245567 - 34245634
Alignment:
Q  144 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||||||||||||||||| ||||| |||||| |||||  |||| |||||||||||| |||||||    
T  34245567 ccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaat 34245634  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 32645012 - 32644944
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctac 207  Q
    ||||||||| |||||||||||||| ||   || ||||||| |||||| ||||||| ||||| |||||||    
T  32645012 ggattccacctgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctac 32644944  T

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Target: scaffold0032 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 34189 - 34261
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 211  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||| |||||| |||||||||| |||||||    
T  34189 ggattccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaat 34261  T

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Target: scaffold0229 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 13182 - 13116
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacct 205  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||  |||||  |||||||||||    
T  13182 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacct 13116  T

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Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 73066 - 73119
Alignment:
Q  139 ggattccacttgtgtaccattaaggtactaatggtatataccattggtcaatta 192  Q
    |||| |||||||| |||||| || ||| ||||||||||||||||||||||||||    
T  73066 ggataccacttgtataccatcaaagtattaatggtatataccattggtcaatta 73119  T

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Target: scaffold0263 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 23094 - 23141
Alignment:
Q  145 cacttgtgtaccattaaggtactaatggtatataccattggtcaatta 192  Q
    |||||||||| ||||||||||| |||||||||||| ||||| ||||||    
T  23094 cacttgtgtatcattaaggtaccaatggtatatactattggccaatta 23141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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