View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20736_high_9 (Length: 395)
Name: NF20736_high_9
Description: NF20736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20736_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 12078545 - 12078729
Alignment:
| Q |
11 |
gaactaagtcttgattctattgtaatggcccagccaggggaataaatatgttgtcattgagatgaaatggtaaaagttaaaatgtaggagacgctttcca |
110 |
Q |
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| T |
12078545 |
gaactaagtcttgattctattgtaatggcccagccaggggaataaatatgttgtcattgagatgaaacggtaaaagttaaaatgtaggagacactttaca |
12078644 |
T |
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| Q |
111 |
ttgaaaaagaaagctgaattaatgatgaacgacacacaaatatgtcaagaaattttacattgaattatgggtctgttcgttacag |
195 |
Q |
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| T |
12078645 |
ttgaaaaagaaagctgaattaatgatgaacgacacacaaatatgtcaagaaattttacattgaattatggatctgttcgttacag |
12078729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 260 - 377
Target Start/End: Original strand, 12078794 - 12078911
Alignment:
| Q |
260 |
cccggggattacaaggagttgattaagactcaccgccgaaagcctctcccatgcactgcaatcccatgcatacaccaaacacaggtatagttggtccaag |
359 |
Q |
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| T |
12078794 |
cccgggaattacaaggagttgattaagactcaccgccgaaagcctctcccatgcactgcaatcccatgcatacaccaaacacaggtatagttggtccaag |
12078893 |
T |
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| Q |
360 |
ttcgaaaactgtttgcaa |
377 |
Q |
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| T |
12078894 |
ttcgaaaactgtttgcaa |
12078911 |
T |
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