View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20736_low_10 (Length: 392)
Name: NF20736_low_10
Description: NF20736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20736_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 37 - 383
Target Start/End: Complemental strand, 6180587 - 6180230
Alignment:
| Q |
37 |
gaaagaaaagggtccctgctttattttactcttcttttttgtgtgaaga-------------------ctgcgacgattaattcttcgagcctgataaga |
117 |
Q |
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| T |
6180587 |
gaaagaaaagggtccctgctttattttactcttcttttttgtgtgaagagaatatactctttgcatgactgcgacgattaattcttcgagcttgataaga |
6180488 |
T |
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| Q |
118 |
ctataatagacggcaaatttatgaaactgaatttgaatccatgatatgtggttaaactagatgagactcttattagtccatgttctcttggataacactc |
217 |
Q |
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| T |
6180487 |
ctataatagacggcaaatttatgaaactgaatttgaatccatgatatgtggttaagctagaagagactcgtattagtccatgttctcttggataacac-- |
6180390 |
T |
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| Q |
218 |
ttttaatgagtttggtgaagtaagtatctcatccaatcatgttatatca-nnnnnnnaaatatcttctaaagcaaatttaaatttggagttattttaccc |
316 |
Q |
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| T |
6180389 |
-------gagtttggtgaagtaagtatctcatccaatcatgttatatcatttttttaaaatttcttctaaagcaaatttaaatttggagttattttaccc |
6180297 |
T |
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| Q |
317 |
aacacaactgcttccttatatcaaggaattttccttattttatttatctcaagtaaagtttcttgtc |
383 |
Q |
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| T |
6180296 |
aacacaactccttccttatatcaaggaattttccttattttatttatctcaagtaaagtttcttgtc |
6180230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 194 - 312
Target Start/End: Complemental strand, 6146138 - 6146020
Alignment:
| Q |
194 |
tccatgttctcttggataacactcttttaatgagtttggtgaagtaagtatctcatccaatcatgttatatcannnnnnnaaatatcttctaaagcaaat |
293 |
Q |
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||||||||||||||| ||| ||||||||||| |||||||||||| | |||||||||| ||||||||| ||||| ||||||||| |||||||||| |
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| T |
6146138 |
tccatgttctcttgggtaatactcttttaataagtttggtgaagcaggtatctcatctaatcatgttgtatcattttctaaaatatcttgtaaagcaaat |
6146039 |
T |
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| Q |
294 |
ttaaatttggagttatttt |
312 |
Q |
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| T |
6146038 |
ttaaatttggagttatttt |
6146020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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