View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20736_low_11 (Length: 369)
Name: NF20736_low_11
Description: NF20736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20736_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 45493629 - 45493987
Alignment:
| Q |
1 |
tcttcaaccttgagcttcgttttgctcttcaatggcgtcttcaccgacacaaaacgaatctgagcataacaactctactgattctgttattcttccagtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45493629 |
tcttcaaccttgagcttcgttttgctcttcaatggcgtcttcaccgacacaaaacgaatctgagcataacaactctactgattctgttattcttccagtt |
45493728 |
T |
|
| Q |
101 |
actaccaaagattcaactagatctggattaacgcattctctcacaatcaagcttgatgagaagaattttctgcttttgagccagcaagttaatggcgtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45493729 |
actaccaaagattcaactagatctggattaacgcattctctcacaatcaagcttgatgagaagaattttctgctttggagccagcaagttaatggcgtca |
45493828 |
T |
|
| Q |
201 |
ttacggcgcacgatcttcatcgtttcgttctcgatccaaagattccactgcaattcgcatctgagagcgatcgccttcaaaacaagatctccgacgaata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45493829 |
ttacggcgcacgatcttcatcgtttcgttctcgatccaaagattccactgcaattcgcatctgagagcgattgccttcaaaacaagatctccgacgaata |
45493928 |
T |
|
| Q |
301 |
tcgcaagtggttaacgaaagatcaggtcctattcacatggcttctttctacgatctctg |
359 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45493929 |
tcgcaagtggttaacgaaagatcaggttctattcacatggcttctttctacgatctctg |
45493987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 1674389 - 1674747
Alignment:
| Q |
1 |
tcttcaaccttgagcttcgttttgctcttcaatggcgtcttcaccgacacaaaacgaatctgagcataacaactctactgattctgttattcttccagtt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1674389 |
tcttcaaccttgagcttcgtttttctcttcaatggcgtcttcaccgacacaaaacgaatctgagcataacaactctactgattctgttattcttccagtt |
1674488 |
T |
|
| Q |
101 |
actaccaaagattcaactagatctggattaacgcattctctcacaatcaagcttgatgagaagaattttctgcttttgagccagcaagttaatggcgtca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
1674489 |
actaccaaagattcaactagatctggattaacgcattctctcacaatcaagcttgatgagaagaactttctgctttggagccagcaagttaatggcgtca |
1674588 |
T |
|
| Q |
201 |
ttacggcgcacgatcttcatcgtttcgttctcgatccaaagattccactgcaattcgcatctgagagcgatcgccttcaaaacaagatctccgacgaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1674589 |
ttacggcgcacgatcttcatcgtttcgttctcgatccaaagattccactgcaattcgcatctgagagcgatcgccttcaaaacaagatctccgacgaata |
1674688 |
T |
|
| Q |
301 |
tcgcaagtggttaacgaaagatcaggtcctattcacatggcttctttctacgatctctg |
359 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1674689 |
tcgcaagtggttaacgaaagatcaggtcctattcacatggcttctttctacgatctctg |
1674747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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