View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20736_low_12 (Length: 365)
Name: NF20736_low_12
Description: NF20736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20736_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 36800869 - 36801219
Alignment:
| Q |
1 |
tttctgcaaacaaattactaacttaattttctgatgataaagcggtcctcttcaaatctctttgtcacaaaaaaccatggaagaagaacaagagaacatg |
100 |
Q |
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| T |
36800869 |
tttctgcaaacaaattactaacttaattttctgatgataaagcggtcctcttcaaatctctttgtcacaaaaaaccatggaagaagaacaagagaacatg |
36800968 |
T |
|
| Q |
101 |
tttttattgatgnnnnnnnatataggnnnnnnnttagtttgacttgtaggattgaaaaatcacataagaaaaggttccttgtgtaggactctta-tttta |
199 |
Q |
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| T |
36800969 |
tttttattgatgtttttttaaagaggaaaaaaattagtttgacttgtaagattgaaaaatcacctaagaaaaggttccttgtgtagacctcttaatttta |
36801068 |
T |
|
| Q |
200 |
tagtgaaatgactaaaatgccatcatttatgttcaactcttatatttggcatttcctgcaaacttacacgtacatatattaataaacgaagtgggtgttt |
299 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36801069 |
tagtgaaatggctaaaatgccatcatttatgttcaactcttatatttggcatttcctgcaaacttacacgtacatatattaataaacgaagtgggtgttt |
36801168 |
T |
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| Q |
300 |
ggattagtttttataggtttatttctacttcccaatgcactttaaacatga |
350 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36801169 |
cgatttgtttttataggtttatttctacttcccaatgcactttaaacatga |
36801219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 37894510 - 37894458
Alignment:
| Q |
294 |
gtgtttggattagtttttataggtttatttctacttcccaatgcactttaaac |
346 |
Q |
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| T |
37894510 |
gtgtttggattagtttttggaggctcatttccacttcccaatgcactttaaac |
37894458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 23860502 - 23860560
Alignment:
| Q |
288 |
aagtgggtgtttggattagtttttataggtttatttctacttcccaatgcactttaaac |
346 |
Q |
| |
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||||||||||||||||||||||||| ||||| |||| |||| ||||||| ||||||| |
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| T |
23860502 |
aagtgggtgtttggattagtttttagaggttcattttcacttttcaatgcattttaaac |
23860560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 9729885 - 9729829
Alignment:
| Q |
290 |
gtgggtgtttggattagtttttataggtttatttctacttcccaatgcactttaaac |
346 |
Q |
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||||||||||||||||| |||| ||| | || || ||||||||||||||||||||| |
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| T |
9729885 |
gtgggtgtttggattagcttttggaggctcatctccacttcccaatgcactttaaac |
9729829 |
T |
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