View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20736_low_13 (Length: 360)
Name: NF20736_low_13
Description: NF20736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20736_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 141 - 342
Target Start/End: Original strand, 25350890 - 25351091
Alignment:
| Q |
141 |
ccattcagtttctgcaattgcatctaaaaaacaataagcaagtgataactaagaaagtgtcattttgagaaagcttaaaacaacaaatatgaatcactag |
240 |
Q |
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| T |
25350890 |
ccattcagtttctgcaattgcatctaaaaaacaataagcaagtgataactaagaaaatgtcattttgagaaagcttaaaacaacaaatatgaattactag |
25350989 |
T |
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| Q |
241 |
cctgagtttattgttctggatgatcccatattactgacactgacttcaaataaattgcttccctataaaccctgcatgcagaaatttttatatatgctta |
340 |
Q |
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| T |
25350990 |
cctgagtttattgttctggatgatcccatattactgacactgacttcaaataaattgcttccctataaaccctgcatgcagaaatttttatatatgctta |
25351089 |
T |
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| Q |
341 |
ga |
342 |
Q |
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|| |
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| T |
25351090 |
ga |
25351091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 25350760 - 25350808
Alignment:
| Q |
11 |
ataatataacaaagataaaattagttcaaaccagttgagctacccaaca |
59 |
Q |
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| T |
25350760 |
ataatataacaaagataaaattagtttaaaccagttgagctacccaaca |
25350808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 271
Target Start/End: Original strand, 25356091 - 25356162
Alignment:
| Q |
200 |
tcattttgagaaagcttaaaacaacaaatatgaatcactagcctgagtttattgttctggatgatcccatat |
271 |
Q |
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|||||||||| || |||||||| |||| || ||||||||| |||||||||||||||| ||| |||||||||| |
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| T |
25356091 |
tcattttgaggaaacttaaaactacaattacgaatcactaacctgagtttattgttccggacgatcccatat |
25356162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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