View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20736_low_14 (Length: 336)
Name: NF20736_low_14
Description: NF20736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20736_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 46838098 - 46838418
Alignment:
| Q |
1 |
aggaagcagcattattaacacaacatcagtgaatgcatacaaggggaactcgacattgattgactacacgtctactaagggtgccattgtggcttttacc |
100 |
Q |
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| T |
46838098 |
aggaagcaacattattaacacaacatcagtgaatgcatacaaggggaactcgacattgattgactacacgtctactaagggtgccattgtggcttttacc |
46838197 |
T |
|
| Q |
101 |
agagcactttcacttcagcttgtgagcaaaggtataagagtgaatggggttgcacctggacctatttggactccattaataccagcttccttcaatgagg |
200 |
Q |
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| T |
46838198 |
agagcactttcacttcagcttgtgagcaaaggtataagagtgaatggggttgcacctggacctatttggactccattaataccagcttccttcaatgagg |
46838297 |
T |
|
| Q |
201 |
aaaagactgctcaatttggttctgatgtgccaatgaagagggctggacagcctgttgaggttgctccctcttttgtgtttcttgcttccaaccaatgctc |
300 |
Q |
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| T |
46838298 |
aaaagactgctcaatttggttctgatgtgccaatgaagagggctggacaacctgttgaggttgctccctcttttgtgtttcttgcttccaaccaatgctc |
46838397 |
T |
|
| Q |
301 |
ctcttacataaccggccaagt |
321 |
Q |
| |
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|||||||||||| |||||||| |
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| T |
46838398 |
ctcttacataactggccaagt |
46838418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 5 - 306
Target Start/End: Complemental strand, 36832430 - 36832129
Alignment:
| Q |
5 |
agcagcattattaacacaacatcagtgaatgcatacaaggggaactcgacattgattgactacacgtctactaagggtgccattgtggcttttaccagag |
104 |
Q |
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||||| |||||||||||||| |||||||||||||||||||| || | | | | | ||||| || |||||||||||||| |||||||| ||||| || | |
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| T |
36832430 |
agcagtattattaacacaacgtcagtgaatgcatacaagggcaatgcaaaactactagactatacatctactaagggtgcaattgtggcatttacaaggg |
36832331 |
T |
|
| Q |
105 |
cactttcacttcagcttgtgagcaaaggtataagagtgaatggggttgcacctggacctatttggactccattaataccagcttccttcaatgaggaaaa |
204 |
Q |
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||| ||||||||||| |||||||| |||||||| || ||||| || ||||||||||| || ||||| ||||| |||||||| || ||||| |||||| | |
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| T |
36832330 |
gactatcacttcagctggtgagcaagggtataagggtcaatggagtggcacctggacccatatggacaccattgataccagcatctttcaaggaggaaga |
36832231 |
T |
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| Q |
205 |
gactgctcaatttggttctgatgtgccaatgaagagggctggacagcctgttgaggttgctccctcttttgtgtttcttgcttccaaccaatgctcctct |
304 |
Q |
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||||||||||||||| | | ||||| ||||| || ||||| |||||| ||||||||||||| || | ||| |||||||| ||||||||||| |||||| |
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| T |
36832230 |
aactgctcaatttggtggtcaagtgcctatgaaaagagctggtcagcctattgaggttgctccatcctatgtctttcttgcctccaaccaatgttcctct |
36832131 |
T |
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| Q |
305 |
ta |
306 |
Q |
| |
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|| |
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|
| T |
36832130 |
ta |
36832129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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