View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20736_low_20 (Length: 276)
Name: NF20736_low_20
Description: NF20736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20736_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 11029816 - 11029559
Alignment:
| Q |
1 |
aaaaacctgaggggcataacttataagttagaattacaaatactatggttttacaacgggatagcattgcaaaacgagggaggttttacattcgggatca |
100 |
Q |
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| T |
11029816 |
aaaaacctgaggggcataacttataagttagaattacaaatacaatggttttacaacgggatagcattgcaaaacgagggaggttttacattcgggatca |
11029717 |
T |
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| Q |
101 |
ttcccttcgctatatttagcatttttgaatttataatgagtaatcaaccagcaaatataagtatcaaaccctagaaacattatttaagactaaaaccagc |
200 |
Q |
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| T |
11029716 |
ttcccttcgctatatttagcatttttgaatttataatgagtaatcaaccagcaaatataagtatcaaaccctagaaacattatttaagactaaaaccagc |
11029617 |
T |
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| Q |
201 |
caaataagctaattaaaatatatagcataccaatttctcaactttacatataattcat |
258 |
Q |
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| T |
11029616 |
aaaataagctaattaaaatatatagcataccaatttctcaactttacatataattcat |
11029559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 1837467 - 1837555
Alignment:
| Q |
155 |
atataagtatcaaaccctagaaacattatttaagactaaaaccagccaaataagctaattaaaatatatagcataccaatttctcaact |
243 |
Q |
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| T |
1837467 |
atataagtatcgaaccttacaaacattatttaaaactaaaaccagcaaaataagctaattaaaatatataccacaccaatttctcaact |
1837555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1836855 - 1836896
Alignment:
| Q |
1 |
aaaaacctgaggggcataacttataagttagaattacaaata |
42 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
1836855 |
aaaaaactgaggggcataagttataagttagaattacaaata |
1836896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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