View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20736_low_3 (Length: 550)

Name: NF20736_low_3
Description: NF20736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20736_low_3
NF20736_low_3
[»] chr7 (8 HSPs)
chr7 (19-542)||(35719987-35720514)
chr7 (326-376)||(2377407-2377457)
chr7 (301-343)||(36653696-36653738)
chr7 (270-342)||(2377194-2377266)
chr7 (326-368)||(47664550-47664592)
chr7 (326-367)||(2377194-2377235)
chr7 (302-343)||(5899131-5899172)
chr7 (294-342)||(27318610-27318658)
[»] chr6 (5 HSPs)
chr6 (296-374)||(5076498-5076576)
chr6 (329-378)||(12339650-12339699)
chr6 (326-378)||(17247921-17247973)
chr6 (336-378)||(14710106-14710148)
chr6 (325-369)||(3197625-3197669)
[»] chr2 (9 HSPs)
chr2 (291-376)||(34233473-34233558)
chr2 (326-378)||(34233612-34233664)
chr2 (270-336)||(34233587-34233653)
chr2 (314-378)||(41358181-41358244)
chr2 (288-344)||(4765792-4765848)
chr2 (293-344)||(7020151-7020202)
chr2 (297-343)||(303449-303495)
chr2 (288-378)||(7019960-7020050)
chr2 (328-373)||(12765065-12765110)
[»] chr1 (7 HSPs)
chr1 (326-378)||(41515212-41515264)
chr1 (270-338)||(41515185-41515253)
chr1 (295-369)||(41515079-41515152)
chr1 (326-375)||(42791358-42791407)
chr1 (299-343)||(24313874-24313918)
chr1 (326-378)||(36816961-36817013)
chr1 (326-378)||(38041149-38041201)
[»] chr8 (10 HSPs)
chr8 (326-378)||(28009206-28009258)
chr8 (326-378)||(28066509-28066561)
chr8 (288-339)||(26218077-26218128)
chr8 (301-343)||(17944793-17944835)
chr8 (236-341)||(28009176-28009282)
chr8 (236-341)||(28066479-28066585)
chr8 (301-372)||(428138-428210)
chr8 (347-377)||(19923471-19923501)
chr8 (346-378)||(13987353-13987385)
chr8 (335-375)||(31588357-31588397)
[»] chr5 (7 HSPs)
chr5 (332-378)||(5028567-5028613)
chr5 (270-340)||(18398807-18398877)
chr5 (294-344)||(32804855-32804905)
chr5 (348-378)||(35110557-35110587)
chr5 (295-375)||(5028420-5028500)
chr5 (330-378)||(7733433-7733481)
chr5 (293-341)||(22252191-22252239)
[»] chr3 (3 HSPs)
chr3 (295-369)||(15042930-15043004)
chr3 (270-344)||(14477279-14477353)
chr3 (293-342)||(14477249-14477298)
[»] chr4 (7 HSPs)
chr4 (21-77)||(41109057-41109113)
chr4 (280-319)||(13850118-13850157)
chr4 (328-378)||(4710309-4710359)
chr4 (295-341)||(33327584-33327630)
chr4 (325-371)||(39295305-39295351)
chr4 (326-372)||(42451855-42451901)
chr4 (301-353)||(42747136-42747187)
[»] scaffold0003 (1 HSPs)
scaffold0003 (232-314)||(420755-420838)
[»] scaffold0001 (1 HSPs)
scaffold0001 (293-342)||(185522-185571)
[»] scaffold0565 (1 HSPs)
scaffold0565 (278-354)||(8461-8537)


Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Original strand, 35719987 - 35720514
Alignment:
Q  19 gattcagtattcaaaagactcttattgcggtcctctcaaattgtcccaagaattccctgaaattgattcagcttcttagcacattataaaccccatctca 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35719987 gattcagtattcaaaagactcttattgtggtcctctcaaattgtcccaagaattccctgaaattgattcagcttcttagcacattataaaccccatctca 35720086  T
Q  119 ctcgtaggccttagcaaataacagaagccaccgtcatttgctctcttctgtattattataataatttacttcaaggaattcaggtccataaattgagctg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35720087 ctcgtaggccttagcaaataacagaagccaccgtcatttgctctcttctgtattattataataatttacttcaaggaattcaggtccataaattgagctg 35720186  T
Q  219 catggccactcaaagaaaaatgctcttctcccaacaacactagtcgcacctaaccgaacttccgaaaatactcatgcgtgaattaactcaagcaggtgtt 318  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||     
T  35720187 catggccactcaaagaaaaatgctcttctcccaacaacgctagtcgcacctaaccgaacttccaaaaatactcatgcatgagttaactcaagcgggtgtc 35720286  T
Q  319 atacccagcgtgagttaactcacgcatgagtattttggaaagtttggttgggagtgagca--nnnnnnngggagaagagcatttttcgccactc-aattg 415  Q
    ||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||         ||||||||||| ||||||||||||| |||||    
T  35720287 atatccagcgtgagttaactcacgcatgagtattttgaaaagttaggttgggagtgaacatttttttttgggagaagagcttttttcgccactcaaattg 35720386  T
Q  416 agaggaaacccagatgagcttagtcatttggcaatgcatt-nnnnnnnnnnnnnctcctacagtacccataatttactgaatgcaacacagtaatgctgt 514  Q
    ||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||    
T  35720387 agaggaaacccagatgagcttagtcatttggcaatgcattaaaaaaaaaaaatactcctacagtacccataatttactgaatgcaacacagtaatgctgt 35720486  T
Q  515 tgctaactctccatctactccctttgct 542  Q
    ||||||||||||||||||||||||||||    
T  35720487 tgctaactctccatctactccctttgct 35720514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 376
Target Start/End: Original strand, 2377407 - 2377457
Alignment:
Q  326 gcgtgagttaactcacgcatgagtattttggaaagtttggttgggagtgag 376  Q
    |||||||||||||||| |||||| ||||| | |||||||||||||||||||    
T  2377407 gcgtgagttaactcacacatgaggatttttggaagtttggttgggagtgag 2377457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 36653738 - 36653696
Alignment:
Q  301 ttaactcaagcaggtgttatacccagcgtgagttaactcacgc 343  Q
    |||||||| |||||||||||| |||||||||||||||||||||    
T  36653738 ttaactcatgcaggtgttatatccagcgtgagttaactcacgc 36653696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 2377194 - 2377266
Alignment:
Q  270 aaccgaacttccgaaaatactcatgcgtgaattaactcaagcaggtgttatacccagcgtgagttaactcacg 342  Q
    |||| ||||||| ||||||| | ||||||| |||||||| |||  |||||||| |||| ||||||||||||||    
T  2377194 aaccaaacttcccaaaatacccctgcgtgagttaactcacgcaaatgttatactcagcatgagttaactcacg 2377266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 47664592 - 47664550
Alignment:
Q  326 gcgtgagttaactcacgcatgagtattttggaaagtttggttg 368  Q
    |||||||||||||||||| |||||||||||| |||||| ||||    
T  47664592 gcgtgagttaactcacgcttgagtattttgggaagtttagttg 47664550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 367
Target Start/End: Complemental strand, 2377235 - 2377194
Alignment:
Q  326 gcgtgagttaactcacgcatgagtattttggaaagtttggtt 367  Q
    ||||||||||||||||||| | ||||||||| ||||||||||    
T  2377235 gcgtgagttaactcacgcaggggtattttgggaagtttggtt 2377194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 5899172 - 5899131
Alignment:
Q  302 taactcaagcaggtgttatacccagcgtgagttaactcacgc 343  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||    
T  5899172 taactcacgcaggtgttattccccgcgtgagttaactcacgc 5899131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 27318610 - 27318658
Alignment:
Q  294 gcgtgaattaactcaagcaggtgttatacccagcgtgagttaactcacg 342  Q
    ||||||||||||||| ||| ||||   ||||||||||||||||||||||    
T  27318610 gcgtgaattaactcacgcaagtgtataacccagcgtgagttaactcacg 27318658  T

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Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 296 - 374
Target Start/End: Complemental strand, 5076576 - 5076498
Alignment:
Q  296 gtgaattaactcaagcaggtgttatacccagcgtgagttaactcacgcatgagtattttggaaagtttggttgggagtg 374  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5076576 gtgagttaactcatgcaggtgttatacccagcgtgagttaactcacgcaggagtattttggaaagtttggttgggagtg 5076498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 12339650 - 12339699
Alignment:
Q  329 tgagttaactcacgcatgagtattttggaaagtttggttgggagtgagca 378  Q
    |||||||||||||| | |||||||||| |||||||||||||||| |||||    
T  12339650 tgagttaactcacgtaggagtattttgaaaagtttggttgggagggagca 12339699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 17247973 - 17247921
Alignment:
Q  326 gcgtgagttaactcacgcatgagtattttggaaagtttggttgggagtgagca 378  Q
    |||||||||||||||||||  |||||||| | ||||||||||||||| |||||    
T  17247973 gcgtgagttaactcacgcagaagtattttcggaagtttggttgggagcgagca 17247921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 378
Target Start/End: Complemental strand, 14710148 - 14710106
Alignment:
Q  336 actcacgcatgagtattttggaaagtttggttgggagtgagca 378  Q
    ||||||||||| ||||||||||||||| |||||| ||||||||    
T  14710148 actcacgcatgggtattttggaaagttgggttggaagtgagca 14710106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 3197625 - 3197669
Alignment:
Q  325 agcgtgagttaactcacgcatgagtattttggaaagtttggttgg 369  Q
    |||| |||||||||||||||||||||||||   ||||||||||||    
T  3197625 agcgcgagttaactcacgcatgagtattttcagaagtttggttgg 3197669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 291 - 376
Target Start/End: Complemental strand, 34233558 - 34233473
Alignment:
Q  291 catgcgtgaattaactcaagcaggtgttatacccagcgtgagttaactcacgcatgagtattttggaaagtttggttgggagtgag 376  Q
    ||||||||| ||||||||||  |||||||||  ||||||||||||||||||||| | |||||||| |||||||| ||| |||||||    
T  34233558 catgcgtgagttaactcaagtgggtgttatattcagcgtgagttaactcacgcaggggtattttgaaaagtttgattgtgagtgag 34233473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 34233612 - 34233664
Alignment:
Q  326 gcgtgagttaactcacgcatgagtattttggaaagtttggttgggagtgagca 378  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  34233612 gcgtgagttaactcacgcatgagtattttgggaagtttggttggaagtgagca 34233664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 336
Target Start/End: Complemental strand, 34233653 - 34233587
Alignment:
Q  270 aaccgaacttccgaaaatactcatgcgtgaattaactcaagcaggtgttatacccagcgtgagttaa 336  Q
    |||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||| | ||||||||    
T  34233653 aaccaaacttcccaaaatactcatgcgtgagttaactcacgcaggtgttatacccaacatgagttaa 34233587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 41358181 - 41358244
Alignment:
Q  314 gtgttatacccagcgtgagttaactcacgcatgagtattttggaaagtttggttgggagtgagca 378  Q
    ||||||||||||| ||||||||| ||||||| ||||| ||||| |||||||||||||||||||||    
T  41358181 gtgttatacccagtgtgagttaattcacgcaagagta-tttgggaagtttggttgggagtgagca 41358244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 4765848 - 4765792
Alignment:
Q  288 actcatgcgtgaattaactcaagcaggtgttatacccagcgtgagttaactcacgca 344  Q
    |||| ||||||| ||||||||||| | |||||||||||||||||||||| |||||||    
T  4765848 actcctgcgtgagttaactcaagcggatgttatacccagcgtgagttaattcacgca 4765792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 7020202 - 7020151
Alignment:
Q  293 tgcgtgaattaactcaagcaggtgttatacccagcgtgagttaactcacgca 344  Q
    ||||||| |||||||| | ||||||||||| |||||||||||||||||||||    
T  7020202 tgcgtgagttaactcatgtaggtgttatacacagcgtgagttaactcacgca 7020151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 303449 - 303495
Alignment:
Q  297 tgaattaactcaagcaggtgttatacccagcgtgagttaactcacgc 343  Q
    |||||||||||| |||||||||||||||  |||||||||||||||||    
T  303449 tgaattaactcacgcaggtgttataccccacgtgagttaactcacgc 303495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 378
Target Start/End: Complemental strand, 7020050 - 7019960
Alignment:
Q  288 actcatgcgtgaattaactcaagcaggtgttatacccagcgtgagttaactcacgcatgagtattttggaaagtttggttgggagtgagca 378  Q
    |||| ||||||| ||| ||| ||| ||||||||||| | |||||| ||||| | ||| || ||||||| |||||||||||||||| |||||    
T  7020050 actcttgcgtgagttagctctagcgggtgttatacctaacgtgagataacttatgcaggactattttgaaaagtttggttgggagcgagca 7019960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 12765065 - 12765110
Alignment:
Q  328 gtgagttaactcacgcatgagtattttggaaagtttggttgggagt 373  Q
    |||||||||||||| |||| |||||||||| |||| ||||||||||    
T  12765065 gtgagttaactcacacatgggtattttggacagttaggttgggagt 12765110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 41515212 - 41515264
Alignment:
Q  326 gcgtgagttaactcacgcatgagtattttggaaagtttggttgggagtgagca 378  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| |||||    
T  41515212 gcgtgagttaactcacgcacgggtattttggaaagtttggttgggagcgagca 41515264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 338
Target Start/End: Complemental strand, 41515253 - 41515185
Alignment:
Q  270 aaccgaacttccgaaaatactcatgcgtgaattaactcaagcaggtgttatacccagcgtgagttaact 338  Q
    |||| ||||| | ||||||| | ||||||| |||||||| || |||||||||| |||||||||||||||    
T  41515253 aaccaaactttccaaaatacccgtgcgtgagttaactcacgcgggtgttatactcagcgtgagttaact 41515185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 41515152 - 41515079
Alignment:
Q  295 cgtgaattaactcaagcaggtgttatacccagcgtgagttaactcacgcatgagtattttggaaagtttggttgg 369  Q
    ||||| ||||||||||| ||||||||   || |||||||||||||||||| | ||||||||| || |||||||||    
T  41515152 cgtgagttaactcaagcgggtgttatgttca-cgtgagttaactcacgcaggcgtattttgggaaatttggttgg 41515079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 42791407 - 42791358
Alignment:
Q  326 gcgtgagttaactcacgcatgagtattttggaaagtttggttgggagtga 375  Q
    |||||| |||||||||||| |  |||||| ||||||||||||||||||||    
T  42791407 gcgtgacttaactcacgcaaggatatttttgaaagtttggttgggagtga 42791358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 24313874 - 24313918
Alignment:
Q  299 aattaactcaagcaggtgttatacccagcgtgagttaactcacgc 343  Q
    |||||||||| |||||||||||| || || |||||||||||||||    
T  24313874 aattaactcatgcaggtgttatatcccgcatgagttaactcacgc 24313918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 36817013 - 36816961
Alignment:
Q  326 gcgtgagttaactcacgcatgagtattttggaaagtttggttgggagtgagca 378  Q
    ||||||||||||||||||  ||||||||||| |||||  |||||||| |||||    
T  36817013 gcgtgagttaactcacgcgggagtattttgggaagttcagttgggagggagca 36816961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 326 - 378
Target Start/End: Complemental strand, 38041201 - 38041149
Alignment:
Q  326 gcgtgagttaactcacgcatgagtattttggaaagtttggttgggagtgagca 378  Q
    |||||| |||||||||||||||| |||||  ||||||||||||| | ||||||    
T  38041201 gcgtgaattaactcacgcatgagcattttcaaaagtttggttggaaatgagca 38041149  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 28009206 - 28009258
Alignment:
Q  326 gcgtgagttaactcacgcatgagtattttggaaagtttggttgggagtgagca 378  Q
    ||||||||||||||||||| | ||||||| ||||||||||||||||| |||||    
T  28009206 gcgtgagttaactcacgcaggggtatttttgaaagtttggttgggagcgagca 28009258  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 28066509 - 28066561
Alignment:
Q  326 gcgtgagttaactcacgcatgagtattttggaaagtttggttgggagtgagca 378  Q
    ||||||||||||||||||| | ||||||| ||||||||||||||||| |||||    
T  28066509 gcgtgagttaactcacgcaggggtatttttgaaagtttggttgggagcgagca 28066561  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 339
Target Start/End: Original strand, 26218077 - 26218128
Alignment:
Q  288 actcatgcgtgaattaactcaagcaggtgttatacccagcgtgagttaactc 339  Q
    |||||||||||| |||||||||||  |||||||||||||| |||||||||||    
T  26218077 actcatgcgtgatttaactcaagcgtgtgttatacccagcatgagttaactc 26218128  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 17944835 - 17944793
Alignment:
Q  301 ttaactcaagcaggtgttatacccagcgtgagttaactcacgc 343  Q
    |||||||| ||||||||||||||| ||||||||||||||||||    
T  17944835 ttaactcacgcaggtgttataccccgcgtgagttaactcacgc 17944793  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 341
Target Start/End: Complemental strand, 28009282 - 28009176
Alignment:
Q  236 aaatgctcttctcccaacaacactag-tcgcacctaaccgaacttccgaaaatactcatgcgtgaattaactcaagcaggtgttatacccagcgtgagtt 334  Q
    |||||||||||||||| ||| | | | |||| || |||| ||||| | ||||||| | ||||||| |||||||| ||||||||   ||||||||||||||    
T  28009282 aaatgctcttctcccatcaaaaattgctcgctcccaaccaaactttcaaaaatacccctgcgtgagttaactcacgcaggtgtataacccagcgtgagtt 28009183  T
Q  335 aactcac 341  Q
    |||||||    
T  28009182 aactcac 28009176  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 341
Target Start/End: Complemental strand, 28066585 - 28066479
Alignment:
Q  236 aaatgctcttctcccaacaacactag-tcgcacctaaccgaacttccgaaaatactcatgcgtgaattaactcaagcaggtgttatacccagcgtgagtt 334  Q
    |||||||||||||||| ||| | | | |||| || |||| ||||| | ||||||| | ||||||| |||||||| ||||||||   ||||||||||||||    
T  28066585 aaatgctcttctcccatcaaaaattgctcgctcccaaccaaactttcaaaaatacccctgcgtgagttaactcacgcaggtgtataacccagcgtgagtt 28066486  T
Q  335 aactcac 341  Q
    |||||||    
T  28066485 aactcac 28066479  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 372
Target Start/End: Original strand, 428138 - 428210
Alignment:
Q  301 ttaactcaagcaggtgttatacccagcgtgag-ttaactcacgcatgagtattttggaaagtttggttgggag 372  Q
    |||||||||||  |||||||||||| |||||| |||||||| ||| | |||||||  ||||||||||||||||    
T  428138 ttaactcaagcttgtgttatacccatcgtgagtttaactcatgcaggggtattttcaaaagtttggttgggag 428210  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 377
Target Start/End: Original strand, 19923471 - 19923501
Alignment:
Q  347 agtattttggaaagtttggttgggagtgagc 377  Q
    |||||||||||||||||||||||||||||||    
T  19923471 agtattttggaaagtttggttgggagtgagc 19923501  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 378
Target Start/End: Complemental strand, 13987385 - 13987353
Alignment:
Q  346 gagtattttggaaagtttggttgggagtgagca 378  Q
    |||||||||||||||||||||||| ||||||||    
T  13987385 gagtattttggaaagtttggttggaagtgagca 13987353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 31588397 - 31588357
Alignment:
Q  335 aactcacgcatgagtattttggaaagtttggttgggagtga 375  Q
    ||||||| |||| ||||||| ||||||||||||||||||||    
T  31588397 aactcacacatgggtattttagaaagtttggttgggagtga 31588357  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 378
Target Start/End: Original strand, 5028567 - 5028613
Alignment:
Q  332 gttaactcacgcatgagtattttggaaagtttggttgggagtgagca 378  Q
    ||||||||||||||||||||||| |||| |||||||| |||||||||    
T  5028567 gttaactcacgcatgagtatttttgaaactttggttgagagtgagca 5028613  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 18398807 - 18398877
Alignment:
Q  270 aaccgaacttccgaaaatactcatgcgtgaattaactcaagcaggtgttatacccagcgtgagttaactca 340  Q
    |||| ||||||| ||||| | ||||||| | |||||||| ||| ||||||||| |||||||||||||||||    
T  18398807 aaccaaacttccaaaaatgcccatgcgtaagttaactcacgcatgtgttatactcagcgtgagttaactca 18398877  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 32804905 - 32804855
Alignment:
Q  294 gcgtgaattaactcaagcaggtgttatacccagcgtgagttaactcacgca 344  Q
    |||||| |||||||| |||| ||||| |||| |||||||||||||||||||    
T  32804905 gcgtgagttaactcacgcagatgttacaccccgcgtgagttaactcacgca 32804855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 378
Target Start/End: Original strand, 35110557 - 35110587
Alignment:
Q  348 gtattttggaaagtttggttgggagtgagca 378  Q
    |||||||||||||||||||||||||||||||    
T  35110557 gtattttggaaagtttggttgggagtgagca 35110587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 375
Target Start/End: Complemental strand, 5028500 - 5028420
Alignment:
Q  295 cgtgaattaactcaagcaggtgttatacccagcgtgagttaactcacgcatgagtattttggaaagtttggttgggagtga 375  Q
    ||||| ||||||||||| | ||||||| | ||||||||||||| |||||||  ||||||| |||  ||||| || ||||||    
T  5028500 cgtgagttaactcaagcggatgttatagctagcgtgagttaacccacgcatatgtattttcgaatttttggctgagagtga 5028420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 378
Target Start/End: Original strand, 7733433 - 7733481
Alignment:
Q  330 gagttaactcacgcatgagtattttggaaagtttggttgggagtgagca 378  Q
    |||||||||||||||||| |||||| |||||||||| || ||| |||||    
T  7733433 gagttaactcacgcatgaatattttcgaaagtttggctgagagcgagca 7733481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 22252239 - 22252191
Alignment:
Q  293 tgcgtgaattaactcaagcaggtgttatacccagcgtgagttaactcac 341  Q
    ||||||| |||||||| |||| ||||| |||| ||||||||||||||||    
T  22252239 tgcgtgacttaactcacgcagttgttaaaccctgcgtgagttaactcac 22252191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 369
Target Start/End: Original strand, 15042930 - 15043004
Alignment:
Q  295 cgtgaattaactcaagcaggtgttatacccagcgtgagttaactcacgcatgagtattttggaaagtttggttgg 369  Q
    ||||| ||||||||||| | ||||||  ||||||| |||||||||||||| | ||||||| | ||||||||||||    
T  15042930 cgtgagttaactcaagcggttgttatgtccagcgtaagttaactcacgcaggggtattttaggaagtttggttgg 15043004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 14477353 - 14477279
Alignment:
Q  270 aaccgaacttccgaaaatactcatgcgtgaattaactcaagcaggtgttatacccagcgtgagttaactcacgca 344  Q
    |||| ||||| ||||||| ||| ||| || |||||||||  ||||||||||| || |||||| ||||||||||||    
T  14477353 aaccaaactttcgaaaatgctcctgcatgtattaactcacacaggtgttatatcctgcgtgacttaactcacgca 14477279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 14477298 - 14477249
Alignment:
Q  293 tgcgtgaattaactcaagcaggtgttatacccagcgtgagttaactcacg 342  Q
    ||||||| |||||||| |||||||||||||||  ||||| ||||||||||    
T  14477298 tgcgtgacttaactcacgcaggtgttataccctacgtgacttaactcacg 14477249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 41109113 - 41109057
Alignment:
Q  21 ttcagtattcaaaagactcttattgcggtcctctcaaattgtcccaagaattccctg 77  Q
    |||||||| |||||| |||||| || ||||||| ||||||||||||||| |||||||    
T  41109113 ttcagtatgcaaaagcctcttaatgtggtcctcccaaattgtcccaagagttccctg 41109057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 319
Target Start/End: Original strand, 13850118 - 13850157
Alignment:
Q  280 ccgaaaatactcatgcgtgaattaactcaagcaggtgtta 319  Q
    |||||||||||||||||||| |||||||| ||||||||||    
T  13850118 ccgaaaatactcatgcgtgacttaactcacgcaggtgtta 13850157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 378
Target Start/End: Complemental strand, 4710359 - 4710309
Alignment:
Q  328 gtgagttaactcacgcatgagtattttggaaagtttggttgggagtgagca 378  Q
    |||| |||| |||||||||||||||||  |||||||||||||||| |||||    
T  4710359 gtgacttaagtcacgcatgagtattttcaaaagtttggttgggagcgagca 4710309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 341
Target Start/End: Original strand, 33327584 - 33327630
Alignment:
Q  295 cgtgaattaactcaagcaggtgttatacccagcgtgagttaactcac 341  Q
    |||||||||| ||| ||||||||||||| ||||||||||||| ||||    
T  33327584 cgtgaattaagtcatgcaggtgttatactcagcgtgagttaagtcac 33327630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 371
Target Start/End: Original strand, 39295305 - 39295351
Alignment:
Q  325 agcgtgagttaactcacgcatgagtattttggaaagtttggttggga 371  Q
    ||||||||||||||||| |||| ||||||| | ||||||||||||||    
T  39295305 agcgtgagttaactcacacatgggtatttttggaagtttggttggga 39295351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Complemental strand, 42451901 - 42451855
Alignment:
Q  326 gcgtgagttaactcacgcatgagtattttggaaagtttggttgggag 372  Q
    |||||| |||| |||| |||||||||||| |||||||||||||||||    
T  42451901 gcgtgacttaagtcacacatgagtattttcgaaagtttggttgggag 42451855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 42747136 - 42747187
Alignment:
Q  301 ttaactcaagcaggtgttatacccagcgtgagttaactcacgcatgagtattt 353  Q
    |||||||| |||||||| || | ||||||||||||||||||||||| ||||||    
T  42747136 ttaactcacgcaggtgt-attctcagcgtgagttaactcacgcatgtgtattt 42747187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 314
Target Start/End: Complemental strand, 420838 - 420755
Alignment:
Q  232 agaaaaatgctcttctcccaacaacact-agtcgcacctaaccgaacttccgaaaatactcatgcgtgaattaactcaagcagg 314  Q
    |||||||||||||||||||||||| | | | | || || |||| |||||| |||||||||||||||| | ||||||||| ||||    
T  420838 agaaaaatgctcttctcccaacaaaaattactagctcccaaccaaacttcggaaaatactcatgcgtaagttaactcaaacagg 420755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 185571 - 185522
Alignment:
Q  293 tgcgtgaattaactcaagcaggtgttatacccagcgtgagttaactcacg 342  Q
    |||||||||||||||| |||||||||| |  |||| ||||||||||||||    
T  185571 tgcgtgaattaactcacgcaggtgttaaattcagcatgagttaactcacg 185522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 278 - 354
Target Start/End: Original strand, 8461 - 8537
Alignment:
Q  278 ttccgaaaatactcatgcgtgaattaactcaagcaggtgttatacccagcgtgagttaactcacgcatgagtatttt 354  Q
    |||| ||||||||||| ||| | |||||| | ||| |||| |||| | || |||||||||||||||| |||||||||    
T  8461 ttccaaaaatactcatacgttagttaactaatgcaagtgtaatacactgcatgagttaactcacgcaagagtatttt 8537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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