View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20736_low_30 (Length: 234)
Name: NF20736_low_30
Description: NF20736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20736_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 32290085 - 32289869
Alignment:
| Q |
1 |
acagaagatgacaaacatttgcagggagggaatatcaacctaacttatatacatgtttgtttttgatatgtaacattgcagacactttggctaatacata |
100 |
Q |
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| T |
32290085 |
acagaagatgacaaacatttgcagggagggaatatcaacctaacttatatacatgtttgtttttgatatgtaacattgcagacactttggctaattcata |
32289986 |
T |
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| Q |
101 |
tataagatgatagtaataatttataaatagaaaaagggagctcccttcagtccaagcaaagaagaaaaggaagaaattcacctcctgcatcattcacaca |
200 |
Q |
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| T |
32289985 |
tataagatgatagtaataatttataaatagaaaaagggagctcccttcagtccaagcaaagaagaaaaggaagaaattcacctcctgcatcattcacaca |
32289886 |
T |
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| Q |
201 |
ttcacaatagcataacc |
217 |
Q |
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||||||||||||||||| |
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| T |
32289885 |
ttcacaatagcataacc |
32289869 |
T |
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Back To:
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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 28429660 - 28429571
Alignment:
| Q |
122 |
tataaatagaaaaagggagctcccttcagtccaagcaaag--aagaaaaggaagaaattcacctcctgcatcattcacacattcacaata |
209 |
Q |
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|||||| || |||||||||||||||||||||||||||||| |||| || || |||||| | |||| ||||||||||||||||||||||| |
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| T |
28429660 |
tataaacagcaaaagggagctcccttcagtccaagcaaagacaagagaaagatgaaatttagctcccgcatcattcacacattcacaata |
28429571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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