View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20736_low_5 (Length: 428)
Name: NF20736_low_5
Description: NF20736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20736_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 41 - 353
Target Start/End: Original strand, 43663932 - 43664245
Alignment:
| Q |
41 |
aataatatgcagcaagttatttcagaacaaacatgcagttaaagttagttcaattttgatgtgannnnnnn-cactctaaaaacattctttctttagtta |
139 |
Q |
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| T |
43663932 |
aataatatgcagcaagttatttcagaacaaacatgcagttaaagttagttcaattttgatgtgattttttttcactctaaaaacattctttctttagtta |
43664031 |
T |
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| Q |
140 |
tgggagttataaaattttattcctctcttttgttgcaggcactcagcaccccttacttggacactgcagcatcaaaaaacatgatgaggaatcaacattc |
239 |
Q |
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| T |
43664032 |
tgggagttataaaattttattcctctcttttgttgcaggcactcagcaccccttacttggacactgcagcatcaaaaaacatgatgaggaatcaacattc |
43664131 |
T |
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| Q |
240 |
tgtaagttcacatttcccaatgtttcactttctaaattgaataggacaaaaatggagtatacttaatgtatttagaatatagtattattattgaagggaa |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43664132 |
tgtaagttcacatttcccaatgtttcactttctaaattgaataggacaaaaatggagtatacttaatgtatttagaatatagtattattattgaagggaa |
43664231 |
T |
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| Q |
340 |
tgtttgttccttcc |
353 |
Q |
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|||||||||||||| |
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| T |
43664232 |
tgtttgttccttcc |
43664245 |
T |
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