View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20736_low_8 (Length: 406)
Name: NF20736_low_8
Description: NF20736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20736_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 5 - 389
Target Start/End: Original strand, 3923520 - 3923904
Alignment:
| Q |
5 |
atccacatcgttcgaattattcaaattagttgtatatgtacccaaactcacattcacatgatcagctaatcttacttgctcaacgctcaagacaagttct |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3923520 |
atccacatcgttcgaattattcaaattagttgtatatgtacccaaactcacattcacatgatcagctaatcttacttgctcaacgctcaagacaagttct |
3923619 |
T |
|
| Q |
105 |
tcatcgaaaggctcttgtgtaacaaacatcaaatcctcattccaaaacggtttcgcgctcttttccttagaaaaactagttctcaaacaaaaactcttcc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3923620 |
tcatcgaaaggctcttgtgtaacaaacatcaaatcctcattccaaaacggtttcgcgctcttttccttagaaaaactagttctcaaacaaaaactcttcc |
3923719 |
T |
|
| Q |
205 |
ctaaaccaacttggacaaacaattccgaactctcaggaggaaattgtagtaacaaatcgtctgcttgaatcacagtgacctttacatacctaagggaagg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3923720 |
ctaaaccaacttggacaaacaattccgaactctcaggaggaaattgtagtaacaaatggtgtgcttgaatcacagtgacctttacatacctaagggaagg |
3923819 |
T |
|
| Q |
305 |
tgacatatataccttagaacgagtatagcaaacagaatcatcagttatctctgttgtatctgaacaccatgcttgaggaaaatat |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3923820 |
tgacatatataccttagaacgagtatagcaaacagaatcatcagttatctctgttgtatctgaacaccatgcttgaggaaaatat |
3923904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University