View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20737_high_2 (Length: 450)
Name: NF20737_high_2
Description: NF20737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20737_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 433
Target Start/End: Original strand, 27136739 - 27137161
Alignment:
| Q |
14 |
tataaattcaagttctccttaatgtttgaattttaatcgaagctattaaccacttaagattgatcattttatttgttagcacatactttaatcttatatt |
113 |
Q |
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| T |
27136739 |
tataaattcaagttctccttaatgtttgaattttaattgaagctattaaccacttaagtttaatcatttcatttgttagcacatactttaatcttaaatt |
27136838 |
T |
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| Q |
114 |
gtctttgtctcaatatgggg---tgggccgatggggcactaatagttattttccattatttataataactccgctgtgtgtattatatcattgtttcttg |
210 |
Q |
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| T |
27136839 |
gtctttgtctcaataagggggggtgggccgatggggcactaatagttattttccattatttataataactccgctgtgtgtattatatcattgtttcttg |
27136938 |
T |
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| Q |
211 |
ttgtaaggatgtcctgatttgaagccacttgtcttctcatgtttccaatttgataataatcacaaagtgcccattgctatctctannnnnnnnnnnnnnn |
310 |
Q |
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| T |
27136939 |
ttgtaaggatgtcctgatttgaagccacttgtcttctcatgtttccaatttgataataatcacaaagtgcccattgctatctctattttttgttttattt |
27137038 |
T |
|
| Q |
311 |
ncttgtttgtaataaatggacaaatgtatgacacttctctgaaatccatataatgatcttggatgttctaatcactcatgcacaagacaaacatatgttg |
410 |
Q |
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| T |
27137039 |
tcttgtttgtaataaatggacaaatgtatgacacttctctgaaatccatataatgatcttggatgttctaatcactcatgcacaagacaaacatatgttg |
27137138 |
T |
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| Q |
411 |
ttgatcatagtatcatcaataac |
433 |
Q |
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| T |
27137139 |
ttgatcatagtatcatcaataac |
27137161 |
T |
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