View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20737_low_3 (Length: 280)
Name: NF20737_low_3
Description: NF20737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20737_low_3 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 27700781 - 27701037
Alignment:
| Q |
7 |
tccaagaatattttagaatgcatcatatctaacactagatcacattatatatgaccaatagcagttcattaagtcggattctagagaacaaaggtcaaga |
106 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
27700781 |
tccaaaaatattttagaatgcatcatatctaacactagatcacattatatctgaccaatagcagttcattaagtcggattctagagaacaaaggtcacga |
27700880 |
T |
|
| Q |
107 |
ctcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacattacttcttctagatcaaagcgatcttttctagtaaggacagag |
206 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27700881 |
ctcttgcaaaaggatctcataaatgttggttcttagatttagttctttatcacacattacttcttctagatcaaagcgatcttttctagtaaggacagag |
27700980 |
T |
|
| Q |
207 |
tagtttgagaaagccatccaaccataaccttttcgacctggtacactacataaaata |
263 |
Q |
| |
|
| |||||||||| |||||||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
27700981 |
tggtttgagaaatccatccaaccataacctttttgacctggtacgctacataaaata |
27701037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 27312768 - 27313024
Alignment:
| Q |
7 |
tccaagaatattttagaatgcatcatatctaacactagatcacattatatatgaccaatagcagttcattaagtcggattctagagaacaaaggtcaaga |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
27312768 |
tccaaaaatattttagaatgcatcatatctaacactagatcacattatatctgaccaaaaccagttcattaagtcggattctagagaacaaaggtcaaga |
27312867 |
T |
|
| Q |
107 |
ctcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacattacttcttctagatcaaagcgatcttttctagtaaggacagag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
27312868 |
ctcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacattacttcttctagatcaaagtgatctttcctagtaaggacagag |
27312967 |
T |
|
| Q |
207 |
tagtttgagaaagccatccaaccataaccttttcgacctggtacactacataaaata |
263 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| | ||| ||| |||||||||||| |
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|
| T |
27312968 |
tagtttgagaaatccatccaaccataaccttttatatctgatacgctacataaaata |
27313024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 27583573 - 27583815
Alignment:
| Q |
7 |
tccaagaatattttagaatgcatcatatctaacactagatcacattatatatgaccaatagcagttcattaagtcggattctagagaacaaaggtcaaga |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
27583573 |
tccaaaaatattttagaatgcatcatatctaacactagatcacattatatctgaacaatagcagttcattaagtcggattctagagaacaaaggtcacga |
27583672 |
T |
|
| Q |
107 |
ctcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacattacttcttctagatcaaagcgatcttttctagtaaggacagag |
206 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
27583673 |
ctcttgcaaaaggatgtcataaatgtcg-------------gttctttatcacacattacttcttctagatcaaagcgatctttcctagtaaggacagag |
27583759 |
T |
|
| Q |
207 |
tagtttgagaaagccatccaaccataaccttttcgacctggtacactacataaaat |
262 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27583760 |
tagtttgagaaatccatccaaccataacctttttgacctggtacactacataaaat |
27583815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 26634543 - 26634277
Alignment:
| Q |
7 |
tccaagaatattttagaatgcatcatatctaacactagatcacattatatatgaccaatagcagttcattaagtcggattctagagaacaaa------gg |
100 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || |
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|
| T |
26634543 |
tccaaaaatatattagaatgcatcatatctaacactagatcacattatatctgaccaatagcagttctttaagtcggattctagagaacaaattaaaggg |
26634444 |
T |
|
| Q |
101 |
tcaagactcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacattacttcttctagatcaaagcgatct----tttctagt |
196 |
Q |
| |
|
||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || ||||| |
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|
| T |
26634443 |
tcacgactcttgcagaaggatttcataaatgtcggttcttagatttagttctttatcacacattaattcttctagatcaaagatatctttaattactagt |
26634344 |
T |
|
| Q |
197 |
aaggacagagtagtttgagaaagccatccaaccataaccttttcgacctggtacactacataaaata |
263 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
26634343 |
aaggacagactagtttgagaaatccatccaaccataacctttttgacctggtacactacataaaata |
26634277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 26740519 - 26740253
Alignment:
| Q |
7 |
tccaagaatattttagaatgcatcatatctaacactagatcacattatatatgaccaatagcagttcattaagtcggattctagagaacaaa------gg |
100 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
26740519 |
tccaaaaatatattagaatgcatcatatctaacactagatcacattatatctgaccaatagcagttctttaagtcggattctagagaacaaattaaaggg |
26740420 |
T |
|
| Q |
101 |
tcaagactcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacattacttcttctagatcaaagcgatct----tttctagt |
196 |
Q |
| |
|
||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || ||||| |
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|
| T |
26740419 |
tcacgactcttgcagaaggatttcataaatgtcggttcttagatttagttctttatcacacattaattcttctagatcaaagatatctttaattactagt |
26740320 |
T |
|
| Q |
197 |
aaggacagagtagtttgagaaagccatccaaccataaccttttcgacctggtacactacataaaata |
263 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26740319 |
aaggacagactagtttgagaaatccatccaaccataacctttttgacctggtacactacataaaata |
26740253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 27659788 - 27659909
Alignment:
| Q |
105 |
gactcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacattacttcttctagatcaaagcgatcttttctagtaaggacag |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||| |||||| ||||||| ||||||| | ||| || | ||||||| ||||||||||| |
|
|
| T |
27659788 |
gactcttgcaaaaggatctcataaatgtcggttatcagatttaactctttaccacacataacttcttgcatatccaaaagctcttttccagtaaggacag |
27659887 |
T |
|
| Q |
205 |
ag--tagtttgagaaagccatc |
224 |
Q |
| |
|
|| |||||||||||| ||||| |
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|
| T |
27659888 |
agtttagtttgagaaacccatc |
27659909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 25487941 - 25487868
Alignment:
| Q |
90 |
gagaacaaaggtcaagactcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacat |
163 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| |||||||||||| ||||||| ||||||||| ||||| |
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|
| T |
25487941 |
gagaacaaaagtcacgactcttgcaaaaggatctcatgaatgtcggttctcagatttatttctttatcccacat |
25487868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 26061189 - 26061116
Alignment:
| Q |
90 |
gagaacaaaggtcaagactcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacat |
163 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| |||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
26061189 |
gagaacaaaagtcacgactcttgcaaaaggatctcatgaatgtcggttctcggatttatttctttatcccacat |
26061116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 26081159 - 26081086
Alignment:
| Q |
90 |
gagaacaaaggtcaagactcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacat |
163 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| |||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
26081159 |
gagaacaaaagtcacgactcttgcaaaaggatctcatgaatgtcggttctcggatttatttctttatcccacat |
26081086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 27712414 - 27712486
Alignment:
| Q |
106 |
actcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacattacttcttctagatca |
179 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| |||| |||| |
|
|
| T |
27712414 |
actcttgcaaaaggatctcataaatgttggttcttagatttagtt-tttatcatgcattacttcctctaaatca |
27712486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 179
Target Start/End: Original strand, 27586434 - 27586523
Alignment:
| Q |
89 |
agagaacaaaggtcaagactcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacattacttcttctagatca |
179 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| |||| |||| |
|
|
| T |
27586434 |
agagaacaaaactcaccactcttgcaaaaggatctcataaatgttggttcttagatttagtt-tttatcatgaattacttcctctaaatca |
27586523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 27587894 - 27587958
Alignment:
| Q |
105 |
gactcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacattacttc |
169 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| | ||||| ||||||||||| ||||||||||| |
|
|
| T |
27587894 |
gactcatgcaaaaggatcttataaatgtcggttgtcagattcagttctttatcccacattacttc |
27587958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 27340499 - 27340568
Alignment:
| Q |
98 |
aggtcaagactcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacattact |
167 |
Q |
| |
|
|||||| |||||| |||||| |||||||| ||||| || ||| ||||| ||||||||||| || |||||| |
|
|
| T |
27340499 |
aggtcatgactctggcaaaacgatctcatgaatgttggctctcagattcagttctttatcccatattact |
27340568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 27401239 - 27401308
Alignment:
| Q |
98 |
aggtcaagactcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacattact |
167 |
Q |
| |
|
|||||| |||||| |||||| |||||||| ||||| || ||| ||||| ||||||||||| || |||||| |
|
|
| T |
27401239 |
aggtcatgactctggcaaaacgatctcatgaatgttggctctcagattcagttctttatcccatattact |
27401308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 67 - 250
Target Start/End: Complemental strand, 5083711 - 5083526
Alignment:
| Q |
67 |
gcagttcattaagtcggattctagagaacaaaggtcaagactcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacattac |
166 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
5083711 |
gcagctcaataagtcggattctagagaacaaaggtcatgactcttgcaaaaggatctcataaatgtcagttcttagatttagttctttatcacgcattac |
5083612 |
T |
|
| Q |
167 |
ttcttctagatcaaagcgatcttttctagtaaggacagag--tagtttgagaaagccatccaaccataaccttttcgacctggtac |
250 |
Q |
| |
|
||||| ||||||| | | ||||||| |||||||| ||| |||||||||||| ||||||||||||| || ||| |||||||||| |
|
|
| T |
5083611 |
ttcttgtagatcagaaagctcttttccagtaaggatggagtttagtttgagaaatccatccaaccatagccgttttgacctggtac |
5083526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 17989363 - 17989450
Alignment:
| Q |
82 |
ggattctagagaacaaaggtcaagactcttgcaaaaggatctcataaatgtcggttcttagatttagttctttatcacacattacttc |
169 |
Q |
| |
|
||||||| ||||||| | ||| ||||||||| |||||||| |||||||| |||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
17989363 |
ggattctggagaacacaagtcgtgactcttgccaaaggatcggataaatgttggttctcagattcagttctttatcccacattacttc |
17989450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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