View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20737_low_4 (Length: 254)
Name: NF20737_low_4
Description: NF20737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20737_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 27136639 - 27136396
Alignment:
| Q |
1 |
ttacaagtgcttcattcctcaaagaattagacagttagaaaaaattattgtactaacaatgtgtggcataagaggtaaatattttgaggatatcctcaac |
100 |
Q |
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| T |
27136639 |
ttacaattgcttcattcctcaaagaattagacacttagaaaaaattattgtactaacaatgtgtggcataagaggtaaatattttgaggatatcttcaac |
27136540 |
T |
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| Q |
101 |
tttagcgtcgccccctccctaccctcctagtccttcaatgtagtgacggtcgtgggtggtgtgatggttggcagtagcctcccgcatcacctccttttct |
200 |
Q |
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| T |
27136539 |
tttagcaccgccccctccctaccctcctcatccttcaatgtagcgacggtcgtgggtggtgtgatggttggcagtagccttttgcatcaccttctttctt |
27136440 |
T |
|
| Q |
201 |
gaatctgccagaggtttcactgctagcatggttgatggtctctg |
244 |
Q |
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| T |
27136439 |
gaatcttccagaagtttcactgttggtctggtcgatggtctctg |
27136396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 244
Target Start/End: Complemental strand, 14752206 - 14752073
Alignment:
| Q |
112 |
cccctccctaccctcctagtccttcaatgtagtgacggtcgtgggtggtgtgatggttggcagtagcctcccgcatcacctcctttt-ctgaatctgcca |
210 |
Q |
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| T |
14752206 |
cccctccctaccctcctcattcttcaatgtagcgacggtcatgggtggtgtgacggttggcagtagcatccagcacgacctccttttcctgaatctgccg |
14752107 |
T |
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| Q |
211 |
gaggtttcactgctagcatggttgatggtctctg |
244 |
Q |
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| T |
14752106 |
tagatttcactgctggcctggtcggtggtctctg |
14752073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 244
Target Start/End: Original strand, 15030608 - 15030732
Alignment:
| Q |
119 |
ctaccctcctagtccttcaatgtagtgacggtcgtgggtggtgtgatggttggcagtagcctcccgcatcacctccttttctgaatctgccagaggtttc |
218 |
Q |
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| T |
15030608 |
ctaccctcctcatccttcaatgtagcgacggccatgtgtggtgttacggttggcagtagcct-ccgcaccaccttctttcttgaatctgccagaggttct |
15030706 |
T |
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| Q |
219 |
actgctagcatggttgatggtctctg |
244 |
Q |
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| T |
15030707 |
actgctggcctggtcggtggtctctg |
15030732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 42797252 - 42797115
Alignment:
| Q |
111 |
ccccctccctaccctcctagtccttcaatgtagtgacggtcgtgggtgg----tgtgatggttggcagta-gcctcccgcatcacctccttttctgaatc |
205 |
Q |
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|||||||||||||||| || ||||||||||||| | |||||||| | ||||||||||||||||| ||||||| || |||||| ||| ||||||| |
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| T |
42797252 |
ccccctccctaccctcatattccttcaatgtagctgcactcgtgggtagctagtgtgatggttggcagtaagcctccctcaccacctcatttcctgaatc |
42797153 |
T |
|
| Q |
206 |
tgccagaggtttcactgctagcatggttgatggtctct |
243 |
Q |
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|||| ||| |||||||| | || |||| | |||||||| |
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| T |
42797152 |
tgccggagatttcactgttggcctggtcggtggtctct |
42797115 |
T |
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