View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20738_low_1 (Length: 649)

Name: NF20738_low_1
Description: NF20738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20738_low_1
NF20738_low_1
[»] chr2 (14 HSPs)
chr2 (20-487)||(35681569-35682036)
chr2 (23-264)||(31635461-31635698)
chr2 (256-482)||(31635882-31636112)
chr2 (349-471)||(22011076-22011198)
chr2 (400-482)||(27952637-27952719)
chr2 (371-459)||(280297-280385)
chr2 (417-487)||(2165636-2165706)
chr2 (361-478)||(33053125-33053241)
chr2 (361-482)||(36648579-36648700)
chr2 (361-485)||(32162225-32162347)
chr2 (350-443)||(18945646-18945739)
chr2 (409-483)||(23457389-23457462)
chr2 (593-638)||(35682142-35682187)
chr2 (406-482)||(36614845-36614921)
[»] chr7 (8 HSPs)
chr7 (23-482)||(4302774-4303234)
chr7 (366-478)||(11001090-11001202)
chr7 (361-481)||(1217473-1217591)
chr7 (370-461)||(1369529-1369620)
chr7 (363-478)||(8915437-8915551)
chr7 (405-481)||(1786424-1786500)
chr7 (361-482)||(13882995-13883117)
chr7 (365-487)||(11228430-11228551)
[»] chr8 (9 HSPs)
chr8 (20-362)||(37192665-37193008)
chr8 (361-487)||(23573240-23573365)
chr8 (417-487)||(22922157-22922227)
chr8 (409-482)||(26377776-26377849)
chr8 (407-482)||(22512360-22512435)
chr8 (343-485)||(2688855-2688999)
chr8 (418-482)||(2188719-2188783)
chr8 (363-459)||(24577813-24577909)
chr8 (431-474)||(37193064-37193107)
[»] chr5 (5 HSPs)
chr5 (349-487)||(21845197-21845335)
chr5 (361-478)||(18252124-18252241)
chr5 (417-459)||(19677630-19677672)
chr5 (453-487)||(21849278-21849312)
chr5 (453-487)||(21857192-21857226)
[»] chr1 (8 HSPs)
chr1 (366-486)||(10926905-10927026)
chr1 (364-487)||(10927811-10927934)
chr1 (366-482)||(13441901-13442015)
chr1 (361-487)||(23988929-23989055)
chr1 (400-472)||(8966022-8966094)
chr1 (360-482)||(31915240-31915365)
chr1 (369-483)||(40805571-40805685)
chr1 (407-470)||(31522584-31522647)
[»] chr6 (15 HSPs)
chr6 (361-487)||(18203141-18203265)
chr6 (361-485)||(12881729-12881852)
chr6 (365-482)||(22888963-22889080)
chr6 (362-478)||(34374051-34374167)
chr6 (417-487)||(30049629-30049699)
chr6 (417-487)||(30051916-30051986)
chr6 (365-482)||(22873520-22873637)
chr6 (365-482)||(22910506-22910623)
chr6 (417-484)||(3541959-3542026)
chr6 (365-487)||(12778664-12778784)
chr6 (437-482)||(11194398-11194443)
chr6 (405-461)||(8047661-8047717)
chr6 (451-487)||(18726879-18726915)
chr6 (407-471)||(32361109-32361173)
chr6 (418-456)||(18720031-18720069)
[»] chr4 (7 HSPs)
chr4 (361-487)||(22716318-22716444)
chr4 (361-487)||(22988773-22988899)
chr4 (361-485)||(10494628-10494752)
chr4 (365-459)||(7634998-7635092)
chr4 (417-487)||(13085398-13085471)
chr4 (426-484)||(6659640-6659697)
chr4 (405-467)||(9260313-9260375)
[»] chr3 (6 HSPs)
chr3 (361-482)||(365863-365983)
chr3 (412-482)||(3064051-3064121)
chr3 (361-470)||(8536655-8536764)
chr3 (406-482)||(2472969-2473045)
chr3 (446-482)||(43304270-43304306)
chr3 (419-464)||(24516698-24516743)
[»] scaffold0110 (1 HSPs)
scaffold0110 (417-487)||(45923-45993)
[»] scaffold0054 (3 HSPs)
scaffold0054 (365-482)||(10359-10476)
scaffold0054 (361-470)||(49018-49127)
scaffold0054 (426-465)||(37484-37523)
[»] scaffold0024 (2 HSPs)
scaffold0024 (365-478)||(145442-145555)
scaffold0024 (365-469)||(144177-144284)


Alignment Details
Target: chr2 (Bit Score: 452; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 20 - 487
Target Start/End: Original strand, 35681569 - 35682036
Alignment:
Q  20 ttatgaatgcatttttaagctttactaaaggcttatataaagtgggaccaagaaacgttagactaagggtactctcaccatttggtgttctgctgcatgt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35681569 ttatgaatgcatttttaagctttactaaaggcttatataaagtgggaccaagaaacgttagactaagggtactctcaccatttggtgttctgctgcatgt 35681668  T
Q  120 tattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttactgtgttggtttcattcattcttacactt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35681669 tattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttactgtgttggtttcattcattcttacactt 35681768  T
Q  220 caagtacaaaatgatcaggcatcacttaatagtactctaacttatacagaattatcaagtgagtctgctattgttggtaccatgctcagtggctgctttg 319  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35681769 caagtacaaaatgatcaggcatcacttaacagtactctaacttatacagaattatcaagtgagtctgctattgttggtaccttgctcagtggctgctttg 35681868  T
Q  320 tccataaaaagggacgctcacgattcaaccaatgggatccaggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagag 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35681869 tccataaaaagggacgctcacgattcaaccaatgggatccaggtggtctcttgttcattgaaggagtcaacatgcatagaaagctctttatcagaaagag 35681968  T
Q  420 aactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 487  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35681969 aacttggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 35682036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 23 - 264
Target Start/End: Original strand, 31635461 - 31635698
Alignment:
Q  23 tgaatgcatttttaagctttactaaaggcttatataaagtgggaccaagaaacgttagactaagggtactctcaccatttggtgttctgctgcatgttat 122  Q
    |||||| |||||||||||||| |||||||||||||||||||| |||||||||| ||| || |||||||||||||||||||||||||   |||||||||||    
T  31635461 tgaatgtatttttaagctttattaaaggcttatataaagtggaaccaagaaacattataccaagggtactctcaccatttggtgtt---ctgcatgttat 31635557  T
Q  123 taaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttactgtgttggtttcattcattcttacacttcaa 222  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||| || ||||||||||||||| ||||||| |||||||    
T  31635558 taaacctttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcta-tgtgttggtttcatttattcttatacttcaa 31635656  T
Q  223 gtacaaaatgatcaggcatcacttaatagtactctaacttat 264  Q
    ||||||||||||||||||||||||||  || |||||||||||    
T  31635657 gtacaaaatgatcaggcatcacttaacggtgctctaacttat 31635698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 256 - 482
Target Start/End: Original strand, 31635882 - 31636112
Alignment:
Q  256 ctaacttatacagaattatcaagtgagtctgctattgttggtaccatgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatggg 355  Q
    |||||||||| |||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||||||||| ||||  |||   |||||||||||||    
T  31635882 ctaacttatatagaattatcaagtgagtctgctattgttggtacattgcacagtggctgctctgtccataaaaacggaccttcagagttcaaccaatggg 31635981  T
Q  356 atccaggtggt----ctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggagga 451  Q
    |||| |||||     ||||||||||||| |||||||||||||||| | || | |||||||  || ||||||||||  |||||||||||||||||||||||    
T  31635982 atccgggtgggtgtgctcttgttcattggaggagtcaacatgcatgggaaactctttatctaaatgagaactcggattcgagttcttcagaggtggagga 31636081  T
Q  452 gactgatgcaggagggttttcttagtaattt 482  Q
    |||||||| ||||||||||| ||||||||||    
T  31636082 gactgatgtaggagggttttattagtaattt 31636112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 349 - 471
Target Start/End: Original strand, 22011076 - 22011198
Alignment:
Q  349 caatgggatccaggtggtctcttgttcattgaaggagtcaacatgcat-agaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtgg 447  Q
    ||||||||||| |||||| |||||||||| |||||||||||||| ||| |||||   |||||| |||| |||||||| ||||||||||||| ||||||||    
T  22011076 caatgggatccgggtggtatcttgttcatcgaaggagtcaacatacatgagaaatt-ctttattagaatgagaactcagggtcgagttctttagaggtgg 22011174  T
Q  448 aggagactgatgcaggagggtttt 471  Q
    |||||| |||||||||||||||||    
T  22011175 aggagagtgatgcaggagggtttt 22011198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 400 - 482
Target Start/End: Complemental strand, 27952719 - 27952637
Alignment:
Q  400 aagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 482  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||    
T  27952719 aagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggttttattaataattt 27952637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 371 - 459
Target Start/End: Complemental strand, 280385 - 280297
Alignment:
Q  371 tgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 459  Q
    ||||||||| |||| |||||||||||   |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  280385 tgttcattggaggattcaacatgcatgtgaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatg 280297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 417 - 487
Target Start/End: Original strand, 2165636 - 2165706
Alignment:
Q  417 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 487  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  2165636 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagagtttccttagtaattttatag 2165706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 361 - 478
Target Start/End: Original strand, 33053125 - 33053241
Alignment:
Q  361 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 460  Q
    |||||||||||||| |||  ||||||| ||||| ||   |||| |||||| ||||  ||||| ||||||||||||||||||||||||||||||||||||     
T  33053125 ggtggtctcttgtttattagaggagtcgacatgaatgagaagctctttattagaataagaac-cggggtcgagttcttcagaggtggaggagactgatgt 33053223  T
Q  461 aggagggttttcttagta 478  Q
    || ||||||| |||||||    
T  33053224 agaagggtttccttagta 33053241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 361 - 482
Target Start/End: Original strand, 36648579 - 36648700
Alignment:
Q  361 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgcttt-atcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 459  Q
    ||||||||||| ||||||| | |||||| ||||||| ||| || |||| |||||||  |||||| || ||||||||||||| || ||||||||||| |||    
T  36648579 ggtggtctcttattcattggaagagtcatcatgcatggaa-gcacttttatcagaacaagaactgggagtcgagttcttcatagatggaggagactcatg 36648677  T
Q  460 caggagggttttcttagtaattt 482  Q
     |||||||||| |||||||||||    
T  36648678 taggagggtttccttagtaattt 36648700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 361 - 485
Target Start/End: Complemental strand, 32162347 - 32162225
Alignment:
Q  361 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 460  Q
    ||||||||||||||||||  || ||||||||||||| | |||| ||||||||||| ||||||||  ||| ||||| ||||||| ||||||||||| |||     
T  32162347 ggtggtctcttgttcattagag-agtcaacatgcatgggaagctctttatcagaatgagaactcaaggttgagtttttcagagatggaggagactaatgt 32162249  T
Q  461 aggagggttttcttagtaattttat 485  Q
    | |||| ||| ||||| ||||||||    
T  32162248 aagaggatttccttag-aattttat 32162225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 350 - 443
Target Start/End: Original strand, 18945646 - 18945739
Alignment:
Q  350 aatgggatccaggtggtctcttgttcattgaaggagtcaacatgcat-agaaagcgctttatcagaaagagaactcggggtcgagttcttcagag 443  Q
    |||||||||||||||||||||||||||||| |||||| |||||| || ||||| | ||| ||||||| ||||| ||||| ||||||| |||||||    
T  18945646 aatgggatccaggtggtctcttgttcattgcaggagttaacatgaatgagaaa-ctcttaatcagaatgagaattcgggatcgagtttttcagag 18945739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 409 - 483
Target Start/End: Original strand, 23457389 - 23457462
Alignment:
Q  409 atcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttt 483  Q
    ||||||| |||||||||||   |||||||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  23457389 atcagaatgagaactcgggtcagagttcttcagaggtggaggcgactgatgtagga-ggttttcttagtaatttt 23457462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 593 - 638
Target Start/End: Original strand, 35682142 - 35682187
Alignment:
Q  593 agaacattatagtatttatttcagttggagcctcagtttcattcat 638  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  35682142 agaacattatagtatttatttcagtttgagcctcagtttcattcat 35682187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 406 - 482
Target Start/End: Original strand, 36614845 - 36614921
Alignment:
Q  406 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 482  Q
    ||||||||||  | ||||||| ||||||||||||| || ||||||||||| | | |||||||||| |||||||||||    
T  36614845 tttatcagaacaaaaactcggagtcgagttcttcatagatggaggagactcacgtaggagggtttccttagtaattt 36614921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 23 - 482
Target Start/End: Original strand, 4302774 - 4303234
Alignment:
Q  23 tgaatgcatttttaagctttactaaaggcttatataaagtgggaccaagaaacgttagactaagggtactctcaccatttggtgttctgctgcatgttat 122  Q
    |||||| |||||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||   |||||||    
T  4302774 tgaatgtatttttaagctttattaaaggcttatataaagtggaaccaagaaacattatactaagggtactctcaccatttggtgttctgc---atgttat 4302870  T
Q  123 taaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttactgtgttggtttcattcattcttacacttcaa 222  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||  ||||||||||||||||||||||||| |||||||    
T  4302871 taaacctttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcaactgtgttggtttcattcattcttatacttcaa 4302970  T
Q  223 gtacaaaatgatcaggcatcacttaatagtactctaacttatacagaattatcaagtgagtctgctattgttggtaccatgctcagtggctgctttgtcc 322  Q
    |||||||||||| ||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||||||||||||  ||| ||||| | ||| |||||    
T  4302971 gtacaaaatgattaggcatcacttaacagtgctctaacttatatagaattatcaagtgattctgctattgttggtacattgcacagtgacagctctgtcc 4303070  T
Q  323 ataaaaagggacgctcacgattcaaccaatgggatccaggtggt----ctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaaga 418  Q
    ||||||| ||||  ||||  ||||||||||||||||| |||||     ||||||||||||| ||||||| |||||||| | |||| |||||||| || ||    
T  4303071 ataaaaacggaccttcacagttcaaccaatgggatccgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatga 4303170  T
Q  419 gaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 482  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  4303171 gaactcgggatcgagttcttcagaggtggaggagactgatgtaggagggttttattagtaattt 4303234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 366 - 478
Target Start/End: Complemental strand, 11001202 - 11001090
Alignment:
Q  366 tctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggag 465  Q
    |||||| ||||||| |||||| ||||||||| | |||| |||||||| || ||||| | ||||||||||||||||||||||||||||||||||| |||||    
T  11001202 tctctttttcattggaggagttaacatgcatgggaagctctttatcacaatgagaatttggggtcgagttcttcagaggtggaggagactgatgtaggag 11001103  T
Q  466 ggttttcttagta 478  Q
    ||||| |||||||    
T  11001102 ggtttccttagta 11001090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 361 - 481
Target Start/End: Complemental strand, 1217591 - 1217473
Alignment:
Q  361 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 460  Q
    |||||||||||||| |||| ||||  | |||||||| |||| | |||||||| || | ||||||||| |||||||||||| |||||||||||||||||||    
T  1217591 ggtggtctcttgttaattggaggacacgacatgcat-gaaatctctttatcaaaacgtgaactcggg-tcgagttcttcaaaggtggaggagactgatgc 1217494  T
Q  461 aggagggttttcttagtaatt 481  Q
    ||||||||||| |||||||||    
T  1217493 aggagggttttattagtaatt 1217473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 370 - 461
Target Start/End: Original strand, 1369529 - 1369620
Alignment:
Q  370 ttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgca 461  Q
    |||||||||| |||||||||||| ||| | |||| |||||||||||  |||||||||| ||||||||||||||||||||||||||| |||||    
T  1369529 ttgttcattggaggagtcaacattcatgggaagctctttatcagaataagaactcgggctcgagttcttcagaggtggaggagactcatgca 1369620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 363 - 478
Target Start/End: Complemental strand, 8915551 - 8915437
Alignment:
Q  363 tggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcag 462  Q
    ||||||||||||||| | |||||||||||||||| | | ||  ||||| |||| ||||| |||||||| |||||||||||| ||||||||||||||| ||    
T  8915551 tggtctcttgttcatcggaggagtcaacatgcatggga-gctttttattagaatgagaattcggggtctagttcttcagagatggaggagactgatgtag 8915453  T
Q  463 gagggttttcttagta 478  Q
    |||||||| |||||||    
T  8915452 gagggtttccttagta 8915437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 405 - 481
Target Start/End: Original strand, 1786424 - 1786500
Alignment:
Q  405 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatt 481  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  1786424 ctttatcaaaatgagaactcgaggtcgagttcttcagaggtggaggagactcatgtaggaaggttttcttagtaatt 1786500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 361 - 482
Target Start/End: Complemental strand, 13883117 - 13882995
Alignment:
Q  361 ggtggtctcttgttcattgaaggagtcaacat--gcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgat 458  Q
    |||||||||||||| |||| ||||| ||||||  ||||   || | |||||| |||| ||||||||||| |||||||||| ||||||||| |||||||||    
T  13883117 ggtggtctcttgtttattggaggagccaacatatgcatgagaatctctttattagaatgagaactcggg-tcgagttctttagaggtggacgagactgat 13883019  T
Q  459 gcaggagggttttcttagtaattt 482  Q
    ||||||||||||| ||||||||||    
T  13883018 gcaggagggttttattagtaattt 13882995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 365 - 487
Target Start/End: Original strand, 11228430 - 11228551
Alignment:
Q  365 gtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcagga 464  Q
    ||||||||||||||  |||||||| ||||||| | |||  |||||| |||| |||||||||||| | ||||||| ||||| |||| ||||||||| ||||    
T  11228430 gtctcttgttcattataggagtcatcatgcatgggaagttctttattagaatgagaactcgggggcaagttcttaagagg-ggagaagactgatgtagga 11228528  T
Q  465 gggttttcttagtaattttatag 487  Q
     ||||| | ||||||||||||||    
T  11228529 tggtttccatagtaattttatag 11228551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 362
Target Start/End: Original strand, 37192665 - 37193008
Alignment:
Q  20 ttatgaatgcatttttaagctttactaaaggcttatataaagtgggaccaagaaacgttagactaa----gggtactctcaccatttggtgttctgctgc 115  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    |||||||||||||||||| ||||||||       
T  37192665 ttatgaatgcatttttaagctttattaaaggcttatatgaagtgggaccaagaaacgttagactaactaagggtactctcaccatttgatgttctgc--- 37192761  T
Q  116 atgttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttactgtgttggtttcattcattcttac 215  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| |  |||||||||||||||||||||||| ||     
T  37192762 atgttattaaacctttacttggacttcatgaaaaaggatattggttattctctcaaataaaaagggatccacttactgtgttggtttcattcattcctat 37192861  T
Q  216 acttcaagtacaaaatgatcaggcatcacttaatagtactctaacttatacagaattatcaagtgagtctgctattgttggtaccatgctcagtggctgc 315  Q
    ||||||||||||| ||| ||||||||||||||| | | ||||| ||| || |||||||||||||| |||||| |||||||||||  ||||||||||||||    
T  37192862 acttcaagtacaacatggtcaggcatcacttaacaatgctctagcttgtatagaattatcaagtgcgtctgcaattgttggtacattgctcagtggctgc 37192961  T
Q  316 tttgtccataaaaagggacgctcacgattcaaccaatgggatccagg 362  Q
    ||||||||||||||||||| |||||  ||||  ||||||||||||||    
T  37192962 tttgtccataaaaagggaccctcacagttcactcaatgggatccagg 37193008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 361 - 487
Target Start/End: Original strand, 23573240 - 23573365
Alignment:
Q  361 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 460  Q
    |||||||| |||||||||| |||||||||||||||| | |||| |||||||| || || ||||| |||||||||||||||||||||||||||||| |||     
T  23573240 ggtggtcttttgttcattggaggagtcaacatgcatgggaagctctttatcaaaatgaaaactccgggtcgagttcttcagaggtggaggagactaatgt 23573339  T
Q  461 aggagggttttcttagtaattttatag 487  Q
    || |||| |||||||||||||||||||    
T  23573340 agaaggg-tttcttagtaattttatag 23573365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 417 - 487
Target Start/End: Complemental strand, 22922227 - 22922157
Alignment:
Q  417 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 487  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  22922227 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 22922157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 409 - 482
Target Start/End: Original strand, 26377776 - 26377849
Alignment:
Q  409 atcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 482  Q
    ||||||| ||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  26377776 atcagaatgagaacttggggtcgagttcttcaaaggtggaggagactgatgtaggagggttttcttagtaattt 26377849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 407 - 482
Target Start/End: Complemental strand, 22512435 - 22512360
Alignment:
Q  407 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 482  Q
    |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  22512435 ttatcagaataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattt 22512360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 343 - 485
Target Start/End: Original strand, 2688855 - 2688999
Alignment:
Q  343 ttcaaccaatgggatcca----ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttctt 438  Q
    |||| |||||||||||||    |||| |||| ||||||||| |||||||||||||||| | || | ||  || |||| ||||||||| | ||||||||||    
T  2688855 ttcacccaatgggatccatgagggtgatctcatgttcattggaggagtcaacatgcatgggaaactct--attagaatgagaactcgtgatcgagttctt 2688952  T
Q  439 cagaggtggaggagactgatgcaggagggttttcttagtaattttat 485  Q
    || |||||||||||||| ||| ||||||||||  |||||| ||||||    
T  2688953 cataggtggaggagactcatgtaggagggtttctttagtatttttat 2688999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 418 - 482
Target Start/End: Complemental strand, 2188783 - 2188719
Alignment:
Q  418 agaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 482  Q
    ||||||||| ||||||||||||| || ||||||||||| | | |||| ||||| |||||||||||    
T  2188783 agaactcggagtcgagttcttcatagatggaggagactcacgtaggaaggtttccttagtaattt 2188719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 363 - 459
Target Start/End: Complemental strand, 24577909 - 24577813
Alignment:
Q  363 tggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 459  Q
    |||||||||||| |||| |||||| || |||||    |||  || |||||||| ||||||||  |||||| ||||||||| ||||||||||||||||    
T  24577909 tggtctcttgtttattggaggagtaaatatgcaagcgaagttctgtatcagaaggagaactcaaggtcgaattcttcagaagtggaggagactgatg 24577813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 474
Target Start/End: Original strand, 37193064 - 37193107
Alignment:
Q  431 gagttcttcagaggtggaggagactgatgcaggagggttttctt 474  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||    
T  37193064 gagttcttcagagatggagtaaactgatgcaggagggttttctt 37193107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 2e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 349 - 487
Target Start/End: Complemental strand, 21845335 - 21845197
Alignment:
Q  349 caatgggatccaggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtgga 448  Q
    ||||||||||| |||||| |||||||||||| |||||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  21845335 caatgggatccgggtggtttcttgttcattggaggagtcaacatgcatgggaagctctttatcagaatgagaactcggggtcgagttcttcagaggtgga 21845236  T
Q  449 ggagactgatgcaggagggttttcttagtaattttatag 487  Q
      ||||||||||| |||||||||||||||||||||||||    
T  21845235 acagactgatgcaagagggttttcttagtaattttatag 21845197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 361 - 478
Target Start/End: Original strand, 18252124 - 18252241
Alignment:
Q  361 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 460  Q
    ||||||||||||| ||||| ||||||| |||||||| ||||||  ||||||| || |||||||||||||| |||||||||||||| |||||| |||||||    
T  18252124 ggtggtctcttgtccattggaggagtccacatgcatggaaagctgtttatcataatgagaactcggggtcaagttcttcagaggtagaggaggctgatgc 18252223  T
Q  461 aggagggttttcttagta 478  Q
    |||||||||| |||||||    
T  18252224 aggagggtttccttagta 18252241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 417 - 459
Target Start/End: Complemental strand, 19677672 - 19677630
Alignment:
Q  417 gagaactcggggtcgagttcttcagaggtggaggagactgatg 459  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19677672 gagaactcggggtcgagttcttcagaggtggaggagactgatg 19677630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 487
Target Start/End: Complemental strand, 21849312 - 21849278
Alignment:
Q  453 actgatgcaggagggttttcttagtaattttatag 487  Q
    ||||||||| |||||||||||||||||||||||||    
T  21849312 actgatgcacgagggttttcttagtaattttatag 21849278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 453 - 487
Target Start/End: Complemental strand, 21857226 - 21857192
Alignment:
Q  453 actgatgcaggagggttttcttagtaattttatag 487  Q
    ||||||||| |||||||||||||||||||||||||    
T  21857226 actgatgcacgagggttttcttagtaattttatag 21857192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 366 - 486
Target Start/End: Original strand, 10926905 - 10927026
Alignment:
Q  366 tctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggag 465  Q
    |||||| ||||||| |||||||||||||||| | |||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||     
T  10926905 tctcttattcattggaggagtcaacatgcatgggaagttctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggat 10927004  T
Q  466 ggttttc-ttagtaattttata 486  Q
    | ||||| ||||||||||||||    
T  10927005 gattttcattagtaattttata 10927026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 364 - 487
Target Start/End: Original strand, 10927811 - 10927934
Alignment:
Q  364 ggtctcttgttcattgaaggagtcaacatgcat-agaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcag 462  Q
    ||||||||||| |||| | |||||||| ||||| ||||| | |||||| |||| |||||||||||||||||||||||||| ||||||||||||| || ||    
T  10927811 ggtctcttgtttattgtaagagtcaacttgcatgagaaa-ctctttattagaatgagaactcggggtcgagttcttcagaagtggaggagactgttgtag 10927909  T
Q  463 gagggttttcttagtaattttatag 487  Q
    |||||||| ||||||||||||||||    
T  10927910 gagggtttccttagtaattttatag 10927934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 366 - 482
Target Start/End: Complemental strand, 13442015 - 13441901
Alignment:
Q  366 tctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggag 465  Q
    ||||||| |||||| |||||||||||||||| | |||| ||||||||||| ||||||| |   |||| ||||||||||||||||||||||||||||| ||    
T  13442015 tctcttgctcattggaggagtcaacatgcatgggaagctctttatcagaatgagaacttga--tcgaattcttcagaggtggaggagactgatgcagaag 13441918  T
Q  466 ggttttcttagtaattt 482  Q
    |||||| ||||||||||    
T  13441917 ggttttgttagtaattt 13441901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 361 - 487
Target Start/End: Original strand, 23988929 - 23989055
Alignment:
Q  361 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 460  Q
    |||| ||||||| ||||||||||||| ||||||||  | |||| ||||| || || ||||||||  |||||||||||||||||||| |||||||| |||     
T  23988929 ggtgatctcttgctcattgaaggagttaacatgcaagggaagctctttaccaaaacgagaactcaaggtcgagttcttcagaggtgtaggagactaatgt 23989028  T
Q  461 aggagggttttcttagtaattttatag 487  Q
    |||||||||| ||||||||||| ||||    
T  23989029 aggagggtttccttagtaatttcatag 23989055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 400 - 472
Target Start/End: Complemental strand, 8966094 - 8966022
Alignment:
Q  400 aagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttc 472  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||    
T  8966094 aagctctttatcagaatgagaactcagggtcgagttcttcagaggtggaggagactgatgtaggaaggttttc 8966022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 360 - 482
Target Start/End: Original strand, 31915240 - 31915365
Alignment:
Q  360 aggtggtctcttgttcattgaaggagtcaaca-tgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggt---ggaggagact 455  Q
    |||| ||||||||||||||| ||||||||||| || || |||| | ||| || |||| ||||||||||||| |||||||||||||||   ||||||||||    
T  31915240 aggtagtctcttgttcattggaggagtcaacaatgaatggaaaactctt-attagaacgagaactcggggttgagttcttcagaggtggaggaggagact 31915338  T
Q  456 gatgcaggagggttttcttagtaattt 482  Q
    |||||| ||||||||| ||||||||||    
T  31915339 gatgcatgagggttttattagtaattt 31915365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 369 - 483
Target Start/End: Original strand, 40805571 - 40805685
Alignment:
Q  369 cttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggt 468  Q
    ||||||||| | |||||||| |||||||   || | | |||||||||  ||||||||||||||| ||||| | |||||||||||||||||| ||||  ||    
T  40805571 cttgttcatcggaggagtcatcatgcatgtgaaactccttatcagaacaagaactcggggtcgacttctttaaaggtggaggagactgatgtaggatagt 40805670  T
Q  469 tttcttagtaatttt 483  Q
    || |||| |||||||    
T  40805671 ttccttattaatttt 40805685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 407 - 470
Target Start/End: Original strand, 31522584 - 31522647
Alignment:
Q  407 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttt 470  Q
    ||||||||| |||||||||  ||||||||||||||||||||| | | |||||| ||||||||||    
T  31522584 ttatcagaacgagaactcgaagtcgagttcttcagaggtggaaggggctgatgtaggagggttt 31522647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 8e-32; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 361 - 487
Target Start/End: Original strand, 18203141 - 18203265
Alignment:
Q  361 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 460  Q
    ||||||||||||||||||  |||||||||||||||| |||| | |||||| | || ||||||||||| |||||||||||||||||||||||||||||||     
T  18203141 ggtggtctcttgttcattcgaggagtcaacatgcatggaaaactctttattaaaatgagaactcggg-tcgagttcttcagaggtggaggagactgatgt 18203239  T
Q  461 aggagggttttcttagtaattttatag 487  Q
    ||||||| ||||| |||||||||||||    
T  18203240 aggaggg-tttctcagtaattttatag 18203265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 361 - 485
Target Start/End: Original strand, 12881729 - 12881852
Alignment:
Q  361 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 460  Q
    |||||||||||||||||||||| ||||||||||||| | |||  ||| ||| ||| |||| ||||||||||||||||||  ||||||||||||||||||     
T  12881729 ggtggtctcttgttcattgaagaagtcaacatgcatgggaagttctt-atcggaatgagagctcggggtcgagttcttcttaggtggaggagactgatgt 12881827  T
Q  461 aggagggttttcttagtaattttat 485  Q
    |||||||||| ||||||||||||||    
T  12881828 aggagggtttccttagtaattttat 12881852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 365 - 482
Target Start/End: Original strand, 22888963 - 22889080
Alignment:
Q  365 gtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcagga 464  Q
    ||||||||||||||| ||||||||| |||||| | |||| |||||||| || ||||||| |||||| | ||| | ||||||||| |||||||||| ||||    
T  22888963 gtctcttgttcattggaggagtcaatatgcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtagga 22889062  T
Q  465 gggttttcttagtaattt 482  Q
    ||||||||||||||||||    
T  22889063 gggttttcttagtaattt 22889080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 362 - 478
Target Start/End: Complemental strand, 34374167 - 34374051
Alignment:
Q  362 gtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgca 461  Q
    |||||||||||||||||| | |||||||||||||| | || | |||||||| || ||||||||||||| |||||||||||| |||||||||||| ||| |    
T  34374167 gtggtctcttgttcattggaagagtcaacatgcatgggaatctctttatcaaaatgagaactcggggtggagttcttcagatgtggaggagactaatgta 34374068  T
Q  462 ggagggttttcttagta 478  Q
     |||||||| |||||||    
T  34374067 agagggtttccttagta 34374051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 417 - 487
Target Start/End: Original strand, 30049629 - 30049699
Alignment:
Q  417 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 487  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  30049629 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 30049699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 417 - 487
Target Start/End: Original strand, 30051916 - 30051986
Alignment:
Q  417 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 487  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  30051916 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 30051986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 365 - 482
Target Start/End: Original strand, 22873520 - 22873637
Alignment:
Q  365 gtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcagga 464  Q
    ||||||||||||||| ||||||||| |||||| | |||| |||||||| || ||||||| ||| |||| ||| | ||||||||| |||||||||| ||||    
T  22873520 gtctcttgttcattggaggagtcaatatgcatgggaagctctttatcataatgagaacttgggatcgatttccttagaggtggatgagactgatgtagga 22873619  T
Q  465 gggttttcttagtaattt 482  Q
    ||||||||||| ||||||    
T  22873620 gggttttcttaataattt 22873637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 365 - 482
Target Start/End: Original strand, 22910506 - 22910623
Alignment:
Q  365 gtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcagga 464  Q
    ||||||||||||||| ||||||||| || ||| | |||| |||||||| || ||||||| |||||| | ||| | ||||||||| |||||||||| ||||    
T  22910506 gtctcttgttcattggaggagtcaatatacatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtagga 22910605  T
Q  465 gggttttcttagtaattt 482  Q
    ||||||||||||||||||    
T  22910606 gggttttcttagtaattt 22910623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 417 - 484
Target Start/End: Original strand, 3541959 - 3542026
Alignment:
Q  417 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttta 484  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  3541959 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaatttta 3542026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 365 - 487
Target Start/End: Complemental strand, 12778784 - 12778664
Alignment:
Q  365 gtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcagga 464  Q
    ||||||||||||||| ||||||||||||||| || || | ||  ||||||| ||||| | |||||| |||||||||||||||||||||||||||| | ||    
T  12778784 gtctcttgttcattggaggagtcaacatgcaaaggaaactct--atcagaatgagaatttggggtcaagttcttcagaggtggaggagactgatgtaaga 12778687  T
Q  465 gggttttcttagtaattttatag 487  Q
    |||||||| ||||| || |||||    
T  12778686 gggttttcatagtatttctatag 12778664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 437 - 482
Target Start/End: Original strand, 11194398 - 11194443
Alignment:
Q  437 ttcagaggtggaggagactgatgcaggagggttttcttagtaattt 482  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  11194398 ttcagaggtggaggagactgatgtaggagagttttcttagtaattt 11194443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 405 - 461
Target Start/End: Complemental strand, 8047717 - 8047661
Alignment:
Q  405 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgca 461  Q
    |||||| ||||  ||||||||||||| ||||||||||||||||||||||| ||||||    
T  8047717 ctttattagaattagaactcggggtcaagttcttcagaggtggaggagaccgatgca 8047661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 487
Target Start/End: Original strand, 18726879 - 18726915
Alignment:
Q  451 agactgatgcaggagggttttcttagtaattttatag 487  Q
    ||||||||||||||||||||| |||||||||||||||    
T  18726879 agactgatgcaggagggtttttttagtaattttatag 18726915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 471
Target Start/End: Original strand, 32361109 - 32361173
Alignment:
Q  407 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 471  Q
    |||||| || ||||||||| ||||||||| || |||||||||| ||||| ||| |||||||||||    
T  32361109 ttatcataatgagaactcgaggtcgagttttttagaggtggagaagactaatgtaggagggtttt 32361173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 418 - 456
Target Start/End: Original strand, 18720031 - 18720069
Alignment:
Q  418 agaactcggggtcgagttcttcagaggtggaggagactg 456  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  18720031 agaattcggggtcgagttcttcaaaggtggaggagactg 18720069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 8e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 361 - 487
Target Start/End: Original strand, 22716318 - 22716444
Alignment:
Q  361 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 460  Q
    ||||||||||||||||||| ||||||||||||| || | |||| |||||||| || |||||||||||||||||||||| |||| ||||||||||||||||    
T  22716318 ggtggtctcttgttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatgc 22716417  T
Q  461 aggagggttttcttagtaattttatag 487  Q
    ||  | ||||| |||||||||| ||||    
T  22716418 agttgagttttattagtaatttaatag 22716444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 361 - 487
Target Start/End: Complemental strand, 22988899 - 22988773
Alignment:
Q  361 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 460  Q
    ||||||||||||||||||| ||||||||||||| || | |||| |||||||| || |||||||||||||||||||||| |||| ||||||||||||||||    
T  22988899 ggtggtctcttgttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatgc 22988800  T
Q  461 aggagggttttcttagtaattttatag 487  Q
    ||  | ||||| |||||||||| ||||    
T  22988799 agttgagttttattagtaatttaatag 22988773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 361 - 485
Target Start/End: Original strand, 10494628 - 10494752
Alignment:
Q  361 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 460  Q
    ||||||||||||||||||| ||||||| |||||||| | ||||  |||||||| |  |||||| | |||||||||||||||| || ||| |||||||||     
T  10494628 ggtggtctcttgttcattggaggagtcgacatgcatgggaagctatttatcaggatcagaacttgaggtcgagttcttcagaagtagagaagactgatgt 10494727  T
Q  461 aggagggttttcttagtaattttat 485  Q
    | |||||||| ||||||| ||||||    
T  10494728 atgagggtttccttagtatttttat 10494752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 365 - 459
Target Start/End: Original strand, 7634998 - 7635092
Alignment:
Q  365 gtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 459  Q
    ||||||||||||| | |||||||||||||||| |  |||  ||||| |||| ||||| | ||||||||||||||||||| |||||||||||||||    
T  7634998 gtctcttgttcatcggaggagtcaacatgcatggggagctttttattagaatgagaatttggggtcgagttcttcagagatggaggagactgatg 7635092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 487
Target Start/End: Complemental strand, 13085471 - 13085398
Alignment:
Q  417 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggaggg---ttttcttagtaattttatag 487  Q
    ||||||||||||||||||||||||||| |||| |||||||||| |||||||   |||| |||||||||||||||    
T  13085471 gagaactcggggtcgagttcttcagagatggaagagactgatgtaggagggtgttttttttagtaattttatag 13085398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 426 - 484
Target Start/End: Complemental strand, 6659697 - 6659640
Alignment:
Q  426 gggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttta 484  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  6659697 gggtcgagttcttcagaggtagaggagactgatgtaggaggg-tttcttagtaatttta 6659640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 467
Target Start/End: Original strand, 9260313 - 9260375
Alignment:
Q  405 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggaggg 467  Q
    |||||||| ||  ||||||||||||||||||||| ||| || ||||||| ||||||| |||||    
T  9260313 ctttatcaaaataagaactcggggtcgagttctttagacgtagaggagattgatgcatgaggg 9260375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 8e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 361 - 482
Target Start/End: Complemental strand, 365983 - 365863
Alignment:
Q  361 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 460  Q
    ||||||||| ||||||||| | |||||||||| ||| ||| || |||||||| || ||||||||| ||||||||||||||||||||||||||| ||||||    
T  365983 ggtggtctcctgttcattggaagagtcaacatacatggaa-gctctttatcaaaacgagaactcgaggtcgagttcttcagaggtggaggagattgatgc 365885  T
Q  461 aggagggttttcttagtaattt 482  Q
    |||||| |||| ||||||||||    
T  365884 aggaggattttattagtaattt 365863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 412 - 482
Target Start/End: Complemental strand, 3064121 - 3064051
Alignment:
Q  412 agaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 482  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3064121 agaacgagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttgttagtaattt 3064051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 361 - 470
Target Start/End: Complemental strand, 8536764 - 8536655
Alignment:
Q  361 ggtggtctcttgttcattgaaggagtcaacatgcat-agaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 459  Q
    |||| |||||||||||||| | ||||||||||  || ||||| |  ||||||||||  ||||||||| ||||||||||| ||||||||| ||| ||||||    
T  8536764 ggtgatctcttgttcattggaagagtcaacatatatgagaaa-ctttttatcagaataagaactcggagtcgagttctttagaggtggaagaggctgatg 8536666  T
Q  460 caggagggttt 470  Q
     ||||||||||    
T  8536665 taggagggttt 8536655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 406 - 482
Target Start/End: Complemental strand, 2473045 - 2472969
Alignment:
Q  406 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 482  Q
    |||||||||| |||||||||||||||||||||| | | ||||||||  ||||| ||  | |||||| ||||||||||    
T  2473045 tttatcagaatgagaactcggggtcgagttctttaaaagtggaggaagctgatacacaaaggttttattagtaattt 2472969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 446 - 482
Target Start/End: Complemental strand, 43304306 - 43304270
Alignment:
Q  446 ggaggagactgatgcaggagggttttcttagtaattt 482  Q
    |||||||||||||||||||||||||| ||||||||||    
T  43304306 ggaggagactgatgcaggagggttttattagtaattt 43304270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 464
Target Start/End: Complemental strand, 24516743 - 24516698
Alignment:
Q  419 gaactcggggtcgagttcttcagaggtggaggagactgatgcagga 464  Q
    ||||||||||||||||||||| || |||||||||| ||||| ||||    
T  24516743 gaactcggggtcgagttcttctgaagtggaggagattgatgtagga 24516698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 417 - 487
Target Start/End: Complemental strand, 45993 - 45923
Alignment:
Q  417 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 487  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  45993 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 45923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 365 - 482
Target Start/End: Original strand, 10359 - 10476
Alignment:
Q  365 gtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcagga 464  Q
    ||||||||||||||| ||||||||| || ||| | |||| |||||||| || ||||||| |||||| | ||| | ||||||||| |||||||||| ||||    
T  10359 gtctcttgttcattggaggagtcaatattcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtagga 10458  T
Q  465 gggttttcttagtaattt 482  Q
    ||||||||||||||||||    
T  10459 gggttttcttagtaattt 10476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 361 - 470
Target Start/End: Original strand, 49018 - 49127
Alignment:
Q  361 ggtggtctcttgttcattgaaggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgc 460  Q
    |||| |||| ||||||| | | |||||||||||||| |||     ||||||||||  |||||||||||| |||||||||||||||||||||||||||||     
T  49018 ggtgttctcgtgttcataggaagagtcaacatgcatggaagttcttttatcagaataagaactcggggttgagttcttcagaggtggaggagactgatgt 49117  T
Q  461 aggagggttt 470  Q
    ||||| ||||    
T  49118 aggagagttt 49127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 426 - 465
Target Start/End: Original strand, 37484 - 37523
Alignment:
Q  426 gggtcgagttcttcagaggtggaggagactgatgcaggag 465  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  37484 gggtcgagttcttcagaggtggaggagactgatgtaggag 37523  T

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Target: scaffold0024 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 365 - 478
Target Start/End: Original strand, 145442 - 145555
Alignment:
Q  365 gtctcttgttcattgaaggagtcaaca-tgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcagg 463  Q
    ||||||||||||||||||||||||||| || |  || | | |||||||||||  | |||||||| || |||||||| ||||||||||||||||||| |||    
T  145442 gtctcttgttcattgaaggagtcaacaatgaacggacaactctttatcagaataataactcggg-tcaagttcttctgaggtggaggagactgatgtagg 145540  T
Q  464 agggttttcttagta 478  Q
    |||||||| ||||||    
T  145541 agggttttattagta 145555  T

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Target: scaffold0024; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 469
Target Start/End: Complemental strand, 144284 - 144177
Alignment:
Q  365 gtctcttgttcattgaaggagtcaaca-tgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggag---actgatgc 460  Q
    ||||||||||||| ||||||||| ||| || || || | | |||||||||||  |||||||||| || |||||||||||| ||||||||   ||||||||    
T  144284 gtctcttgttcatcgaaggagtcgacaatgaatggacaactctttatcagaataagaactcggg-tcaagttcttcagagatggaggaggagactgatgc 144186  T
Q  461 aggagggtt 469  Q
    |||||||||    
T  144185 aggagggtt 144177  T

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