View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20738_low_11 (Length: 222)

Name: NF20738_low_11
Description: NF20738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20738_low_11
NF20738_low_11
[»] chr4 (15 HSPs)
chr4 (25-146)||(38088215-38088326)
chr4 (139-206)||(12473704-12473771)
chr4 (139-206)||(12528113-12528180)
chr4 (136-206)||(55590479-55590549)
chr4 (137-206)||(35869675-35869744)
chr4 (140-206)||(33249478-33249544)
chr4 (140-206)||(52910153-52910219)
chr4 (139-206)||(52012778-52012845)
chr4 (136-206)||(21260791-21260861)
chr4 (135-194)||(22343333-22343392)
chr4 (140-206)||(34829187-34829253)
chr4 (139-198)||(28092855-28092914)
chr4 (139-198)||(54277634-54277693)
chr4 (140-206)||(49999692-49999758)
chr4 (136-206)||(51811911-51811981)
[»] chr3 (16 HSPs)
chr3 (136-205)||(10179868-10179937)
chr3 (136-205)||(10018671-10018740)
chr3 (136-202)||(32319473-32319539)
chr3 (140-206)||(50934501-50934567)
chr3 (143-206)||(33509684-33509747)
chr3 (139-206)||(47426350-47426417)
chr3 (136-206)||(44380251-44380321)
chr3 (136-205)||(10123211-10123280)
chr3 (137-206)||(37742726-37742792)
chr3 (139-206)||(47186175-47186242)
chr3 (141-201)||(39498778-39498838)
chr3 (139-206)||(31187174-31187241)
chr3 (139-198)||(34029403-34029462)
chr3 (139-198)||(42273334-42273393)
chr3 (139-206)||(42664673-42664740)
chr3 (139-198)||(46489767-46489826)
[»] chr5 (12 HSPs)
chr5 (135-206)||(19357365-19357436)
chr5 (139-206)||(1826259-1826326)
chr5 (136-206)||(9827785-9827855)
chr5 (136-206)||(11607638-11607708)
chr5 (136-206)||(39570147-39570217)
chr5 (139-206)||(38010718-38010785)
chr5 (144-206)||(33858642-33858704)
chr5 (139-206)||(13015381-13015448)
chr5 (139-206)||(13086753-13086820)
chr5 (139-206)||(29989962-29990029)
chr5 (139-198)||(35622816-35622875)
chr5 (139-204)||(13478151-13478216)
[»] chr2 (5 HSPs)
chr2 (136-206)||(34392185-34392255)
chr2 (136-206)||(7381689-7381759)
chr2 (136-206)||(21603956-21604026)
chr2 (136-206)||(37358025-37358095)
chr2 (153-206)||(23863907-23863958)
[»] chr7 (5 HSPs)
chr7 (139-206)||(48250154-48250221)
chr7 (136-206)||(35341533-35341603)
chr7 (139-203)||(40856392-40856456)
chr7 (139-187)||(40893165-40893213)
chr7 (136-198)||(48072386-48072446)
[»] chr1 (8 HSPs)
chr1 (139-201)||(29119433-29119495)
chr1 (139-206)||(2569037-2569104)
chr1 (136-206)||(32676133-32676203)
chr1 (135-201)||(7214520-7214586)
chr1 (136-206)||(8462126-8462195)
chr1 (136-206)||(25161306-25161376)
chr1 (139-192)||(46435571-46435624)
chr1 (139-206)||(8809744-8809811)
[»] chr8 (6 HSPs)
chr8 (136-203)||(41179670-41179737)
chr8 (139-206)||(24337934-24338001)
chr8 (146-206)||(18168392-18168452)
chr8 (146-206)||(18631949-18632009)
chr8 (139-206)||(1514803-1514870)
chr8 (100-137)||(1217147-1217184)
[»] chr6 (4 HSPs)
chr6 (139-206)||(5403980-5404047)
chr6 (139-204)||(11753167-11753232)
chr6 (140-200)||(1211954-1212014)
chr6 (139-206)||(34245567-34245634)
[»] scaffold0032 (1 HSPs)
scaffold0032 (136-206)||(34191-34261)
[»] scaffold0229 (1 HSPs)
scaffold0229 (140-200)||(13116-13176)
[»] scaffold0041 (1 HSPs)
scaffold0041 (139-187)||(73071-73119)
[»] scaffold0263 (1 HSPs)
scaffold0263 (140-187)||(23094-23141)


Alignment Details
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 38088326 - 38088215
Alignment:
Q  25 tctttgtgagtaagctcttaatctaaaaaatcatttatactacactttgtttttagggtccctctatctctatgcatgtttctttgttttcctctcccta 124  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||          |||||||| ||||||||||||||||    
T  38088326 tctttgtgagtaaactcttaatctaaaaaatcatttatactacgctttgtttttagggtctctct----------atgtttctctgttttcctctcccta 38088237  T
Q  125 acaatgacataattccacttgt 146  Q
    | ||||||||||||||||||||    
T  38088236 aaaatgacataattccacttgt 38088215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 12473704 - 12473771
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||| |||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||    
T  12473704 ccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaat 12473771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 12528113 - 12528180
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||| |||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||    
T  12528113 ccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaat 12528180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 55590479 - 55590549
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||| |||||||||||    
T  55590479 attccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaat 55590549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 35869744 - 35869675
Alignment:
Q  137 ttccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||||||||||||||||| |||||||||||||||||  |||||| | ||||||||||||||||    
T  35869744 ttccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaat 35869675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 33249544 - 33249478
Alignment:
Q  140 cacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||||||||||| |||||||||||| ||||| |||||| |||||| |||||||||||    
T  33249544 cacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaat 33249478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 52910219 - 52910153
Alignment:
Q  140 cacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||| | ||||| |||| ||||||||||||| |||||||||||||||||||||||||    
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaat 52910153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 52012778 - 52012845
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||||||||||||||| |||| |||||| |||||  |||| |||||||||||| |||||||    
T  52012778 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaat 52012845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 21260791 - 21260861
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||| | |||||||||||||| |||| |||||| |||||| |||||| |||||| |||||||||||    
T  21260791 attccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaat 21260861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 22343333 - 22343392
Alignment:
Q  135 aattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtg 194  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||  |||||| ||||||    
T  22343333 aattccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtg 22343392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 34829253 - 34829187
Alignment:
Q  140 cacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||| ||||| |||||||||| |||| |||||| || ||| ||||||||||||| |||||||||||    
T  34829253 cacttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaat 34829187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 28092914 - 28092855
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccac 198  Q
    ||||||||||||||||  | ||| |||| |||||| ||||||||||| ||||||||||||    
T  28092914 ccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccac 28092855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 54277693 - 54277634
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccac 198  Q
    ||||||||||||||||  | ||| |||| |||||| ||||||||||| ||||||||||||    
T  54277693 ccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccac 54277634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 49999758 - 49999692
Alignment:
Q  140 cacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||| ||| |||||||| ||| |  ||||||||||||| |||||| ||| |||||||    
T  49999758 cacttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaat 49999692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 51811911 - 51811981
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||| ||||||||||||||||  || | ||||||  ||||| |||||| ||| ||||||||||||||    
T  51811911 attccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaat 51811981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 10179937 - 10179868
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaa 205  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||    
T  10179937 attccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 10018740 - 10018671
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaa 205  Q
    ||||||||||||||||||||| |||| |||| |||||||||||||||||| |||||||||||||||||||    
T  10018740 attccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 32319539 - 32319473
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctac 202  Q
    |||| ||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||    
T  32319539 attctacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctac 32319473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 50934501 - 50934567
Alignment:
Q  140 cacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| |||||||    
T  50934501 cacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaat 50934567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 33509684 - 33509747
Alignment:
Q  143 ttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||||||||||||||| ||||||| |||||  |||||| ||||||||||||||||||    
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaat 33509747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 47426350 - 47426417
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||||||||||||||| ||| |||||||||||||| |||||| |||||| |||||| ||||    
T  47426350 ccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaat 47426417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 44380251 - 44380321
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||||||||||||||| |||||||||||| ||||  |||||| |||||| |||||| ||||    
T  44380251 attccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaat 44380321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 10123280 - 10123211
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaa 205  Q
    ||||||||||||||||||||| |||  |||| |||||| || |||||||| |||||||||||||||||||    
T  10123280 attccacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctaccaa 10123211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 37742726 - 37742792
Alignment:
Q  137 ttccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||   ||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||    
T  37742726 ttccacttgtgta---ttaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaat 37742792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 47186175 - 47186242
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||||||||||||||| |||| |||||| |||||| |||| | |||||||||| |||||||    
T  47186175 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaat 47186242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 201
Target Start/End: Complemental strand, 39498838 - 39498778
Alignment:
Q  141 acttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccaccta 201  Q
    |||||||||||||||| |||| |||| ||||||  ||||||||||||||||||| ||||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcaccta 39498778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 31187241 - 31187174
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||| |||||||||||||||| |||| |||||| |||||  |||| | |||||||||| |||||||    
T  31187241 ccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaat 31187174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 34029462 - 34029403
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccac 198  Q
    |||||||| |||||||||||||| |||| |||||| ||||| ||||| | ||||||||||    
T  34029462 ccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccac 34029403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 42273334 - 42273393
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccac 198  Q
    ||||||||||||||||  | ||| |||| |||||| ||||||||||| ||||||||||||    
T  42273334 ccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccac 42273393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 42664673 - 42664740
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||||||||||||||| || | |||||| |||||  |||| | |||||||||| |||||||    
T  42664673 ccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaat 42664740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 46489826 - 46489767
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccac 198  Q
    ||||||||||||||||  | ||| |||| |||||| ||||||||||| ||||||||||||    
T  46489826 ccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccac 46489767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 19357436 - 19357365
Alignment:
Q  135 aattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||||||||||    
T  19357436 aattccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaat 19357365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 1826259 - 1826326
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||    
T  1826259 ccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaat 1826326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 9827785 - 9827855
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||||||||||||||| ||||||||||||| || |||||||| ||||| ||||||||||||    
T  9827785 attccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaat 9827855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 11607708 - 11607638
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||| |||||||||||||| |||||||||||||||||  |||||| ||||||||||||||||||    
T  11607708 attccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaat 11607638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 39570217 - 39570147
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||| |||||| |||  |||||||||||||||||| |||||| |||||| |||||||||||    
T  39570217 attccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaat 39570147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 38010785 - 38010718
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||||||||||||||| |||| |||||| |||||| |||| | |||||||||| |||||||    
T  38010785 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaat 38010718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 33858704 - 33858642
Alignment:
Q  144 tgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||||||| ||| ||||||| |||||  |||||| ||||||||||||||||||    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaat 33858642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 13015381 - 13015448
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||||||||||||||| |||| |||||| |||||  |||| | |||||||||| |||||||    
T  13015381 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaat 13015448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 13086753 - 13086820
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||||||||||||||| |||| |||||| |||||  |||| | |||||||||| |||||||    
T  13086753 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaat 13086820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 29989962 - 29990029
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||||||||||||||  |||| |||||| |||||  |||| | |||||||||| |||||||    
T  29989962 ccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaat 29990029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 35622816 - 35622875
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccac 198  Q
    ||||||||||||||||  | ||| |||| |||||| ||||||||||| ||||||||||||    
T  35622816 ccacttgtgtaccattgggataccaatgttatataacattggtcaatgaaagtgtgccac 35622875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 13478216 - 13478151
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctacca 204  Q
    |||||||||||||||||||| || |||| |||||| |||||  |||| | |||||||||| |||||    
T  13478216 ccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacatacca 13478151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 34392255 - 34392185
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||||||||||| |||||| |||||||||||||||||| |||||| ||||||||||||||||||    
T  34392255 attccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaat 34392185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 7381689 - 7381759
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||| |||||||||||||||||||| |||||||||||| ||||| |||||| ||||||||| ||||||||    
T  7381689 attccgcttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaat 7381759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 21603956 - 21604026
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||||||||||||||| |||||||||||||||||  |||||| |||||  |||||||||||    
T  21603956 attccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaat 21604026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 37358095 - 37358025
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||| ||||||||||| |||| ||||||||||||   ||||| |||||| |||||| ||||    
T  37358095 attccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaat 37358025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 23863958 - 23863907
Alignment:
Q  153 ttaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||| ||||||||||   |||||||||||| ||||||||||||||||||    
T  23863958 ttaaggtaccaatggtatatt--attggtcaattagagtgtgccacctaccaat 23863907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 48250154 - 48250221
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||||| ||||||||||||||||||    
T  48250154 ccacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaat 48250221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 35341533 - 35341603
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||||||||||||||| |||| ||||||||||||  |||||| ||||||||||||||||||    
T  35341533 attccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaat 35341603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 40856392 - 40856456
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctacc 203  Q
    |||||| |||| |||||||||||||||| ||||||  |||| ||||||| |||||| ||||||||    
T  40856392 ccacttatgtatcattaaggtactaatgatatatattattgatcaattagagtgtgtcacctacc 40856456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 40893213 - 40893165
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaatta 187  Q
    |||||||| |||||| || ||| ||||||||||||||||||||||||||    
T  40893213 ccacttgtataccatcaaagtattaatggtatataccattggtcaatta 40893165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 48072386 - 48072446
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccac 198  Q
    ||||||||||||||| |||||||||| ||| |  |||||||||| ||||||| ||||||||||    
T  48072386 attccacttgtgtactattaaggtaccaatag--tataccattgatcaattagagtgtgccac 48072446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 29119495 - 29119433
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccaccta 201  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  29119495 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccaccta 29119433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 2569037 - 2569104
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||||||||||||||| ||||||||||| |||| | |||||| ||||||||||||||||||    
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaat 2569104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 32676133 - 32676203
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||| | ||  ||||||||||||    
T  32676133 attccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaat 32676203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 7214586 - 7214520
Alignment:
Q  135 aattccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccaccta 201  Q
    ||||||| ||||||||||||||||||||||| |||||||  |||||||||||| |||||| ||||||    
T  7214586 aattccatttgtgtaccattaaggtactaatagtatatattattggtcaattagagtgtgtcaccta 7214520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 8462126 - 8462195
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||||||  ||||| |||| ||||||||||| ||||| ||||||| ||||||||||||||||||    
T  8462126 attccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaat 8462195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 25161306 - 25161376
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||||||||||||| ||   |||||||||||||||||  |||||| ||||||||||||| ||||    
T  25161306 attccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaat 25161376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 46435624 - 46435571
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtg 192  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||||| ||||    
T  46435624 ccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtg 46435571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 8809811 - 8809744
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||||||||||||||| |||| |||||| |||||  |||| | |||||||||| |||||||    
T  8809811 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaat 8809744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 41179737 - 41179670
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctacc 203  Q
    |||||||||||||||||||||||||| |||| |||||| |||||| ||||||||||||| ||||||||    
T  41179737 attccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctacc 41179670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 24338001 - 24337934
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||| |||||||||  ||||||||||||||| ||||||||| ||||||||| ||||||||    
T  24338001 ccacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaat 24337934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 18168392 - 18168452
Alignment:
Q  146 tgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||||| ||||||||||| ||||| ||||||| ||||| ||||||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaat 18168452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 18631949 - 18632009
Alignment:
Q  146 tgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||||| ||||||||||| ||||| ||||||| ||||| ||||||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaat 18632009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 1514803 - 1514870
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    ||||||||||||||||||||||| |||| |||||| ||||| ||||| | ||||| |||| |||||||    
T  1514803 ccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaat 1514870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 1217147 - 1217184
Alignment:
Q  100 atgtttctttgttttcctctccctaacaatgacataat 137  Q
    ||||||||||||||||||||||| || |||||||||||    
T  1217147 atgtttctttgttttcctctcccaaaaaatgacataat 1217184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 5404047 - 5403980
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||||||||||||||||||||||||  |||||||| ||| ||| ||||||||||||||    
T  5404047 ccacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaat 5403980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 11753167 - 11753232
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctacca 204  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||| ||||| ||||||||||    
T  11753167 ccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacca 11753232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 1212014 - 1211954
Alignment:
Q  140 cacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacct 200  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||||  |||||||||||    
T  1212014 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacct 1211954  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 34245567 - 34245634
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||||||||||| ||||| |||||| |||||  |||| |||||||||||| |||||||    
T  34245567 ccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaat 34245634  T

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Target: scaffold0032 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 34191 - 34261
Alignment:
Q  136 attccacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacctaccaat 206  Q
    |||||||||||||||||||||||||| |||||||||||  ||||| |||||| |||||||||| |||||||    
T  34191 attccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaat 34261  T

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Target: scaffold0229 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 13176 - 13116
Alignment:
Q  140 cacttgtgtaccattaaggtactaatggtatataccattggtcaattaaagtgtgccacct 200  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||||  |||||||||||    
T  13176 cacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacct 13116  T

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Target: scaffold0041 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 73071 - 73119
Alignment:
Q  139 ccacttgtgtaccattaaggtactaatggtatataccattggtcaatta 187  Q
    |||||||| |||||| || ||| ||||||||||||||||||||||||||    
T  73071 ccacttgtataccatcaaagtattaatggtatataccattggtcaatta 73119  T

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Target: scaffold0263 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 23094 - 23141
Alignment:
Q  140 cacttgtgtaccattaaggtactaatggtatataccattggtcaatta 187  Q
    |||||||||| ||||||||||| |||||||||||| ||||| ||||||    
T  23094 cacttgtgtatcattaaggtaccaatggtatatactattggccaatta 23141  T

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